Browse Element(s) Details


Os.18241.2.A1_x_at

Description gb:AK120693.1
DB_XREF= gi:37990316
TID=Os.18241.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18241 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013014A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013169O12, full insert sequence.
FL= gb:AK120693.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4457010/11Histidine-containing phosphotransfer protein 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44510Os.10731.1.A1_a_at5/115+25818783..25820763retrotransposon protein, putative, unclassified
LOC_Os05g44510Os.48015.1.A1_x_at1/115+25818783..25820763retrotransposon protein, putative, unclassified
LOC_Os05g44520Os.46995.1.S1_x_at4/115+25821500..25824320retrotransposon protein, putative, unclassified
LOC_Os05g44520Os.46995.1.S1_at3/115+25821500..25824320retrotransposon protein, putative, unclassified
LOC_Os05g44530OsAffx.15102.1.S1_at10/115+25826086..25826825BTB/POZ domain containing protein
LOC_Os05g44540OsAffx.27308.1.S1_at11/115+25827636..25828684BTB/POZ domain containing protein
LOC_Os05g44550OsAffx.27309.1.S1_at11/115+25830056..25832629hypothetical protein
LOC_Os05g44550OsAffx.14914.1.S1_x_at2/115+25830056..25832629hypothetical protein
LOC_Os05g44550OsAffx.14914.2.S1_x_at1/115+25830056..25832629hypothetical protein
LOC_Os05g44560Os.18241.1.S1_at9/115+25835279..25842870Kinesin motor domain containing protein, expressed
LOC_Os05g44570Os.18241.2.A1_x_at10/115+25844778..25852081Histidine-containing phosphotransfer protein 4, putative, expressed
LOC_Os05g44570Os.52244.2.S1_x_at9/115+25844778..25852081Histidine-containing phosphotransfer protein 4, putative, expressed
LOC_Os05g44570Os.55846.1.S1_at1/115+25844778..25852081Histidine-containing phosphotransfer protein 4, putative, expressed
LOC_Os05g44580Os.27617.1.S1_at11/115+25852223..25855690expressed protein
LOC_Os05g44590Os.27643.1.A1_at11/115+25859225..25864693ATP-dependent protease La, putative, expressed
LOC_Os05g44590Os.24593.1.S1_at10/115+25859225..25864693ATP-dependent protease La, putative, expressed
LOC_Os05g44590OsAffx.24861.1.S1_at1/115+25859225..25864693ATP-dependent protease La, putative, expressed
LOC_Os05g44600Os.9897.1.S1_at9/115+25865908..25868995Pectinesterase family protein, expressed
LOC_Os05g44600Os.29826.2.S1_x_at1/115+25865908..25868995Pectinesterase family protein, expressed
LOC_Os05g44610Os.17396.1.S1_at10/115+25869547..25872622expressed protein
LOC_Os05g44620Os.20602.2.S1_x_at11/115+25874644..25877070hAT family dimerisation domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000160biological_processtwo-component signal transduction system (phosphorelay)
GO:0007165biological_processsignal transduction
GO:0009736biological_processcytokinin mediated signaling
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004871molecular_functionsignal transducer activity
GO:0005515molecular_functionprotein binding
GO:0009927molecular_functionhistidine phosphotransfer kinase activity
GO:0016772molecular_functiontransferase activity, transferring phosphorus-containing groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18241.2.A1_x_at--845--5391Chr05:25847473..25847497 (25 bp)
GAAGCATCCGAAAGACTTCGCCAGA
LOC_Os05g44570
Os.18241.2.A1_x_at--1088--6251Chr05:25847450..25847474 (25 bp)
GATGGGACACACACATGCAGCAATT
LOC_Os05g44570
Os.18241.2.A1_x_at--671--1611NONE
AGCTGTTCTAGCATTGGTGCCTCCA
NONE
Os.18241.2.A1_x_at--360--6671Chr05:25845936..25845960 (25 bp)
GTTGCACGAGATCCTTCCAGAAAGT
LOC_Os05g44570
Os.18241.2.A1_x_at--757--5931Chr05:25845904..25845928 (25 bp)
GAGCATGCCGTCCTCAGGCAGAAGT
LOC_Os05g44570
Os.18241.2.A1_x_at--553--2871Chr05:25845887..25845907 (21 bp)
AAGTGGGAGTCCTACTTCCAGCTGT
LOC_Os05g44570
Os.18241.2.A1_x_at--536--1511Chr05:25845238..25845262 (25 bp)
AGCAGCCGGCTATTGAATTGGTCTC
LOC_Os05g44570
Os.18241.2.A1_x_at--881--8551Chr05:25845198..25845222 (25 bp)
TGGATGCGACTAGGCTGGTACACAA
LOC_Os05g44570
Os.18241.2.A1_x_at--899--8571Chr05:25845183..25845207 (25 bp)
TGGTACACAAGAGCAGCCTGCCGTT
LOC_Os05g44570
Os.18241.2.A1_x_at--311--3831Chr05:25845166..25845190 (25 bp)
CTGCCGTTGTTCTAGTATGCCACTA
LOC_Os05g44570
Os.18241.2.A1_x_at--413--5671Chr05:25845098..25845122 (25 bp)
GACATGCATGTCTGCTTGTTTATGA
LOC_Os05g44570
Target Sequence 
GAAGCATCCGAAAGACTTCGCCAGATGGGACACACACATGCAGCAATTGAAAGGCAGCTGTTCTAGCATTGGTGCCTCCA
GGGTGAAGAATGAATGCACTTCATTCAGGAATTTCTGTGGAGAAGAAAACGCCGAAGGTTGCACGAGATCCTTCCAGAAA
GTGAAGAGGGAGCATGCCGTCCTCAGGCAGAAGTGGGAGTCCTACTTCCAGCTGTTGCGACAAGCTGGTCCTGCTGGGAC
CGCGACTAGGCCTGCGGGCAAGTAAGCTATAAGCAGCCGGCTATTGAATTGGTCTCGGGCTGCTGCTGCCGTGGATGCGA
CTAGGCTGGTACACAAGAGCAGCCTGCCGTTGTTCTAGTATGCCACTACGGTGAAAACCCGTATATAGACGTGCTACGAC
TTATGAGTTGTGACATGCATGTCTGCTTGTTTATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18241.2.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis