Browse Element(s) Details


Os.18503.1.S1_at

Description gb:CB096741
DB_XREF= gi:27920933
DB_XREF=AF53-Rpf_07_N04_T7_008.ab1
CLONE=C0002620
TID=Os.18503.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.18503 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein pir:T47556 (A.thaliana) T47556 pyruvate kinase-like protein - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g224107/11pyruvate kinase, putative, expressed
LOC_Os12g051101/11pyruvate kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g22350OsAffx.1412.2.S1_at1/119+13504997..13507840retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g22360NANA9+13508239..13514349retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g22370OsAffx.29975.2.S1_at11/119+13518939..13521063hypothetical protein
LOC_Os09g22380NANA9+13521536..13522892hypothetical protein
LOC_Os09g22390OsAffx.17848.4.S1_x_at2/119+13526084..13527210transposon protein, putative, unclassified
LOC_Os09g22400OsAffx.17848.3.S1_x_at4/119+13527868..13530733hypothetical protein
LOC_Os09g22400OsAffx.17848.1.S1_x_at4/119+13527868..13530733hypothetical protein
LOC_Os09g22400OsAffx.17848.5.S1_x_at4/119+13527868..13530733hypothetical protein
LOC_Os09g22400OsAffx.17848.2.S1_x_at2/119+13527868..13530733hypothetical protein
LOC_Os09g22400OsAffx.17848.1.S1_at2/119+13527868..13530733hypothetical protein
LOC_Os09g22410Os.18503.1.S1_s_at11/119+13531932..13533249pyruvate kinase, putative, expressed
LOC_Os09g22410Os.18503.1.S1_at7/119+13531932..13533249pyruvate kinase, putative, expressed
LOC_Os09g22410OsAffx.6365.1.S1_at3/119+13531932..13533249pyruvate kinase, putative, expressed
LOC_Os09g22420OsAffx.17849.1.S1_at11/119+13536731..13537689hypothetical protein
LOC_Os09g22420OsAffx.6361.1.S1_at2/119+13536731..13537689hypothetical protein
LOC_Os09g22430OsAffx.6366.1.S1_at11/119+13538170..13539189hypothetical protein
LOC_Os09g22440Os.9979.1.S1_at11/119+13552672..13557088expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0004743molecular_functionpyruvate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18503.1.S1_at--1105--2771Chr09:13532299..13532323 (25 bp)
AAGAGCAAAGCCTCCATCTCCCTGT
LOC_Os09g22410
Os.18503.1.S1_at--1150--2352Chr09:13532305..13532329 (25 bp)
AAAGCCTCCATCTCCCTGTTATTCT
LOC_Os09g22410
Os.18503.1.S1_at--369--9671Chr09:13532974..13532998 (25 bp)
TACCTGTTAAGGTGTTTGTTAGCTT
LOC_Os09g22410
Os.18503.1.S1_at--281--9651Chr09:13533005..13533029 (25 bp)
TCAGTATTTGTGTCCAGTATCCACC
LOC_Os09g22410
Os.18503.1.S1_at--178--6891Chr09:13533008..13533032 (25 bp)
GTATTTGTGTCCAGTATCCACCATG
LOC_Os09g22410
Os.18503.1.S1_at--402--10251Chr09:13533011..13533035 (25 bp)
TTTGTGTCCAGTATCCACCATGCAG
LOC_Os09g22410
Os.18503.1.S1_at--373--6911NONE
GTATCCACCATGCAGCTGGTTCATG
NONE
Os.18503.1.S1_at--272--3391NONE
CAGCTGGTTCATGCAAATCCTTTTG
NONE
Os.18503.1.S1_at--760--7891NONE
GGTTCATGCAAATCCTTTTGTATAA
NONE
Os.18503.1.S1_at--147--231Chr09:13533066..13533090 (25 bp)
ATATTCTATAGACTCTTAGCTTTCT
LOC_Os09g22410
Os.18503.1.S1_at--1015--10011NONE
TAGACTCTTAGCTTTCTAACATTGC
NONE
Target Sequence 
AAGAGCAAAGCCTCCATCTCCCTGTTATTCTCACCCCTTACCAGGGGCAGGAGGCCTCCTCACATGTACTGCCAATTAAC
TTCGCTGGGCTTGCTAAGGCTGNGAAGCCAAGTGCCACAATANNNNNTNNNNNANNNTNGTTNANANGTTTCAGAAAACA
AAGCCGAATTTACATGTCTACACTGGTATCTCCGAAGTGCCTCGTTTTCAACGTCAAGAATCGTCAGATGCTCACCNATC
TGAACGGCCATAGCGTTATGTTCCTTAGAGGACTACTCGTTAAGGTGTTCCTACAAGAACTACCTGTTAAGGTGTTTGTT
AGCTTTATGGNTCAGTATTTGTGTCCAGTATCCACCATGCAGCTGGTTCATGCAAATCCTTTTGTATAACAAATATTCTA
TAGACTCTTAGCTTTCTAACATTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18503.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis