Browse Element(s) Details


Os.18609.1.S1_at

Description gb:AK105856.1
DB_XREF= gi:32991065
TID=Os.18609.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18609 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-H06, full insert sequence.
FL= gb:AK105856.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0372011/11SIS domain containing protein, expressed
LOC_Os11g0390011/11glucosamine-fructose-6-phosphate aminotransferase, isomerizing family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03670Os.50555.1.S1_at7/1112+1472687..1475197D-mannose binding lectin family protein
LOC_Os12g03670Os.50555.1.S2_at5/1112+1472687..1475197D-mannose binding lectin family protein
LOC_Os12g03680OsAffx.31567.1.S1_at7/1112+1476356..1486011retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g03680OsAffx.28520.1.S1_at1/1112+1476356..1486011retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g03690OsAffx.31567.1.S1_at11/1112+1490359..1492845D-mannose binding lectin family protein
LOC_Os12g03700Os.5811.1.S1_at11/1112+1493521..1494560pentatricopeptide, putative, expressed
LOC_Os12g03710Os.22510.1.A1_at2/1112+1497460..1498353heterogeneous nuclear ribonucleoprotein, putative, expressed
LOC_Os12g03720Os.18609.1.S1_at11/1112+1499415..1504525SIS domain containing protein, expressed
LOC_Os12g03720Os.50822.1.S1_at5/1112+1499415..1504525SIS domain containing protein, expressed
LOC_Os12g03730OsAffx.18657.1.S1_at11/1112+1506770..1513053zinc finger family protein, putative
LOC_Os12g03730Os.24473.1.A1_s_at11/1112+1506770..1513053zinc finger family protein, putative
LOC_Os12g03740OsAffx.19473.1.S1_s_at11/1112+1513488..1518353F-box domain containing protein, expressed
LOC_Os12g03740OsAffx.19473.1.S1_at11/1112+1513488..1518353F-box domain containing protein, expressed
LOC_Os12g03750OsAffx.7476.1.S1_at11/1112+1520080..1525548NB-ARC domain containing protein, expressed
LOC_Os12g03750Os.57501.1.S1_at1/1112+1520080..1525548NB-ARC domain containing protein, expressed
LOC_Os12g03750OsAffx.12164.1.S1_at1/1112+1520080..1525548NB-ARC domain containing protein, expressed
LOC_Os12g03760Os.15833.1.S1_at4/1112+1527561..1531654retrotransposon protein, putative, unclassified
LOC_Os12g03760OsAffx.30486.1.S1_at1/1112+1527561..1531654retrotransposon protein, putative, unclassified
LOC_Os12g03760Os.49373.1.S1_at1/1112+1527561..1531654retrotransposon protein, putative, unclassified
LOC_Os12g03760OsAffx.9762.1.S1_at1/1112+1527561..1531654retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0008483molecular_functiontransaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18609.1.S1_at--57--5532Chr12:1500133..1500157 (25 bp)
GAAAACCTTCCGATCATCGTCATTG
LOC_Os12g03720
Os.18609.1.S1_at--620--512Chr12:1500118..1500142 (25 bp)
ATCGTCATTGCTACACGTGATGCGT
LOC_Os12g03720
Os.18609.1.S1_at--863--7572Chr12:1499961..1499985 (25 bp)
GGGCGTCTGATAGTGATGTGCTCAA
LOC_Os12g03720
Os.18609.1.S1_at--611--10272Chr12:1499918..1499942 (25 bp)
TTTGCCCTAGTGGATCTTGCAGGGT
LOC_Os12g03720
Os.18609.1.S1_at--34--5352Chr12:1499889..1499913 (25 bp)
GAAGTTCCAGAGGTCGCTGACTGTC
LOC_Os12g03720
Os.18609.1.S1_at--376--8952Chr12:1499872..1499896 (25 bp)
TGACTGTCTCCAGCCAGTGATTAAC
LOC_Os12g03720
Os.18609.1.S1_at--1153--6752Chr12:1499726..1499746 (21 bp)
GTTACAGCTGCTCGCATACCATCTG
LOC_Os12g03720
Os.18609.1.S1_at--931--1732Chr12:1499709..1499733 (25 bp)
ACCATCTGACAGTTCTTCGAGGATT
LOC_Os12g03720
Os.18609.1.S1_at--273--8232Chr12:1499660..1499684 (25 bp)
GGCAAAGAGTGTGACTACCCAATGA
LOC_Os12g03720
Os.18609.1.S1_at--340--5772Chr12:1499591..1499615 (25 bp)
GACGTTGTATCAAATCCATCCTATA
LOC_Os12g03720
Os.18609.1.S1_at--1048--1253Chr12:1499486..1499510 (25 bp)
AGATTCTTGAGGTGGCTAGCATTAC
LOC_Os12g03720
Target Sequence 
GAAAACCTTCCGATCATCGTCATTGCTACACGTGATGCGTGCTTCAGCAAGCANCANTCAGTGATTCAGCAGCTCCTTTC
TCGCAAGGGGCGTCTGATAGTGATGTGCTCAAAGGGAGACGCATCTGCNGTTTGCCCTAGTGGATCTTGCAGGGTTATTG
AAGTTCCAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAGCTGCTCGCATACCATCTGACAGTT
CTTCGAGGATTTGATGTTGATCAACCAAGGAATCTGGCAAAGAGTGTGACTACCCAATGAGTAGGGGGTTCTATCANNTA
NNNNNNNAGTTGTATCAGATCCAATAGAGNTCAGACGTTGTATCAAATCCATCCTATAGAGAATAGGTTGTGTAGCTATT
GNTTGAATGTTATTACTCATAGCCATTTCNCAGTTATGTAATTATTTTTAGATAANNNCTGAGATTCTTGAGGTGGCTAG
CATTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18609.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis