Browse Element(s) Details


Os.20092.1.S1_at

Description gb:AK121858.1
DB_XREF= gi:37991481
TID=Os.20092.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20092 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor-like protein kinase (OSJNBa0046L02.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033102I19, full insert sequence.
FL= gb:AK121858.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0110011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01060Os.26654.2.S1_x_at11/1110+51290..57140U-box domain containing protein, expressed
LOC_Os10g01060Os.26654.1.S1_at11/1110+51290..57140U-box domain containing protein, expressed
LOC_Os10g01060Os.26654.1.S1_a_at11/1110+51290..57140U-box domain containing protein, expressed
LOC_Os10g01070OsAffx.20824.1.S1_at10/1110+59581..60476hypothetical protein
LOC_Os10g01080Os.11788.1.S1_at8/1110+65261..66414pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os10g01080Os.36435.2.S1_x_at5/1110+65261..66414pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os10g01090OsAffx.20823.2.S1_x_at11/1110+69449..70417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01090OsAffx.20823.2.S1_at11/1110+69449..70417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01090OsAffx.22945.1.S1_at1/1110+69449..70417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01100Os.20092.1.S1_at11/1110+79108..81917Protein kinase domain containing protein, expressed
LOC_Os10g01110Os.46869.1.A1_at11/1110+84584..87611Serine carboxypeptidase family protein, expressed
LOC_Os10g01110Os.46869.2.S1_x_at10/1110+84584..87611Serine carboxypeptidase family protein, expressed
LOC_Os10g01110OsAffx.19331.1.S1_at1/1110+84584..87611Serine carboxypeptidase family protein, expressed
LOC_Os10g01120OsAffx.450.1.S1_at11/1110+89181..90171retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01134Os.11341.3.S1_at11/1110+94309..100623Serine carboxypeptidase family protein, expressed
LOC_Os10g01134Os.11341.3.S1_x_at11/1110+94309..100623Serine carboxypeptidase family protein, expressed
LOC_Os10g01134Os.11341.1.S1_a_at11/1110+94309..100623Serine carboxypeptidase family protein, expressed
LOC_Os10g01150OsAffx.449.1.A1_at11/1110+101923..102590hypothetical protein
LOC_Os10g01150OsAffx.449.1.A1_x_at11/1110+101923..102590hypothetical protein
LOC_Os10g01164OsAffx.448.1.S1_x_at6/1110+104817..107217retrotransposon protein, putative, unclassified
LOC_Os10g01164OsAffx.448.1.S1_at3/1110+104817..107217retrotransposon protein, putative, unclassified
LOC_Os10g01164OsAffx.8127.1.S1_at1/1110+104817..107217retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20092.1.S1_at--958--2751Chr10:81446..81470 (25 bp)
AAGACGGCCATGTGGTGCCTTCAGG
LOC_Os10g01100
Os.20092.1.S1_at--1032--8091Chr10:81571..81595 (25 bp)
GGACGACTGATCTCTCCTAGGAGTA
LOC_Os10g01100
Os.20092.1.S1_at--595--10091Chr10:81588..81612 (25 bp)
TAGGAGTACTCCACTTCTTGCCACG
LOC_Os10g01100
Os.20092.1.S1_at--1074--2031Chr10:81600..81624 (25 bp)
ACTTCTTGCCACGAGAGACACACAA
LOC_Os10g01100
Os.20092.1.S1_at--1108--5931Chr10:81671..81695 (25 bp)
GAGCAGAGCACTGCATATCCTGCGT
LOC_Os10g01100
Os.20092.1.S1_at--516--251Chr10:81685..81709 (25 bp)
ATATCCTGCGTTGTCTGATTTGCCT
LOC_Os10g01100
Os.20092.1.S1_at--626--8831Chr10:81700..81724 (25 bp)
TGATTTGCCTGCTGGGCTCACGACA
LOC_Os10g01100
Os.20092.1.S1_at--516--2111Chr10:81746..81770 (25 bp)
ACATGATGAGTGGATTACGCTTCAA
LOC_Os10g01100
Os.20092.1.S1_at--676--6431Chr10:81774..81798 (25 bp)
GATACGCACCATCAAATTCGTCGGC
LOC_Os10g01100
Os.20092.1.S1_at--829--451Chr10:81799..81823 (25 bp)
ATCTCTCTCGTAGGCTCAGCGCAGA
LOC_Os10g01100
Os.20092.1.S1_at--581--8311Chr10:81811..81835 (25 bp)
GGCTCAGCGCAGATATCATGACATA
LOC_Os10g01100
Target Sequence 
AAGACGGCCATGTGGTGCCTTCAGGACCGCGCCGACATGAGGCCCTCCATGGGCAAGGTCGCCAAGATGCTCGAGGGCAC
CGTCGAGATCACCGAGCCCGTCAAGCCCACCATCTTCTGCGTCCAGGACGACTGATCTCTCCTAGGAGTACTCCACTTCT
TGCCACGAGAGACACACAAATTATCTTTCTTATTTATTATACTAGTACTAGTTCAGATCAGATCAGAGCAGAGCACTGCA
TATCCTGCGTTGTCTGATTTGCCTGCTGGGCTCACGACAGCAACTGAGCAAGGCAAATGTACATGATGAGTGGATTACGC
TTCAAAATGATACGCACCATCAAATTCGTCGGCATCTCTCTCGTAGGCTCAGCGCAGATATCATGACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20092.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis