Browse Element(s) Details


Os.2030.1.S1_at

Description gb:AK111374.1
DB_XREF= gi:32996583
TID=Os.2030.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2030 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1316_H05.17 (OJ1316_H05.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-A09, full insert sequence.
FL= gb:AK111374.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4604011/11Bromodomain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46000Os.46012.2.S1_x_at9/111+26470581..26476285retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g46000Os.27088.1.A1_x_at6/111+26470581..26476285retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g46000Os.46012.3.S1_x_at6/111+26470581..26476285retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g46010OsAffx.21460.2.S1_s_at11/111+26481478..26482627hypothetical protein
LOC_Os01g46010OsAffx.21460.1.S1_at9/111+26481478..26482627hypothetical protein
LOC_Os01g46020OsAffx.21459.1.S1_at11/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46020Os.48001.1.A1_at10/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46020OsAffx.21459.2.S1_s_at5/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46030OsAffx.21458.1.S1_at11/111+26496763..26498414Protein kinase domain containing protein
LOC_Os01g46040Os.2030.2.S1_s_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46040Os.2030.1.S1_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46040OsAffx.2249.1.S1_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46050OsAffx.23682.1.S1_at8/111+26506274..26506624hypothetical protein
LOC_Os01g46060Os.17964.1.S1_at11/111+26510731..26516992expressed protein
LOC_Os01g46060Os.17964.2.S1_x_at10/111+26510731..26516992expressed protein
LOC_Os01g46070Os.12729.1.S1_at11/111+26517600..26521350Malate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g46080Os.54427.1.A1_at11/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46080Os.34087.4.S1_x_at2/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46080Os.21387.3.S1_x_at1/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46080Os.35566.1.A1_x_at1/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2030.1.S1_at--568--10311Chr01:26500389..26500413 (25 bp)
TTTCAGAAGGTCCTGCAAGATTCTA
LOC_Os01g46040
Os.2030.1.S1_at--635--2811Chr01:26500373..26500397 (25 bp)
AAGATTCTACCTCAGTGTCCCTTTT
LOC_Os01g46040
Os.2030.1.S1_at--441--9631Chr01:26500362..26500386 (25 bp)
TCAGTGTCCCTTTTTTGTCGAGGTT
LOC_Os01g46040
Os.2030.1.S1_at--956--10251Chr01:26500349..26500373 (25 bp)
TTTGTCGAGGTTCCTGCTCTGTGAA
LOC_Os01g46040
Os.2030.1.S1_at--418--9271Chr01:26500338..26500362 (25 bp)
TCCTGCTCTGTGAACTGCTGATATA
LOC_Os01g46040
Os.2030.1.S1_at--1002--431Chr01:26500314..26500338 (25 bp)
ATCTTTGTTTCAGAATGCTGTTGGC
LOC_Os01g46040
Os.2030.1.S1_at--771--2471Chr01:26500257..26500281 (25 bp)
AACACCGTAGTTATCATATCCTAGA
LOC_Os01g46040
Os.2030.1.S1_at--476--251Chr01:26500242..26500266 (25 bp)
ATATCCTAGATATGTCAACTTTGCA
LOC_Os01g46040
Os.2030.1.S1_at--502--7091Chr01:26500229..26500253 (25 bp)
GTCAACTTTGCATTTTGTCAGATGT
LOC_Os01g46040
Os.2030.1.S1_at--847--7111Chr01:26500213..26500237 (25 bp)
GTCAGATGTCATACCGTTGTGTTTG
LOC_Os01g46040
Os.2030.1.S1_at--759--9451Chr01:26500146..26500170 (25 bp)
TCTGATACTGAAACGTTTGGTGAAC
LOC_Os01g46040
Target Sequence 
TTTCAGAAGGTCCTGCAAGATTCTACCTCAGTGTCCCTTTTTTGTCGAGGTTCCTGCTCTGTGAACTGCTGATATATCTT
TGTTTCAGAATGCTGTTGGCTTCAACAGGACTTCGTGAGACCANTGAGTCCATAACACCGTAGTTATCATATCCTAGATA
TGTCAACTTTGCATTTTGTCAGATGTCATACCGTTGTGTTTGTAAGTTGGAACNAGCGGGGGTTGTATGTTGGGATCANG
GGTTTTCTGATACTGAAACGTTTGGTGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2030.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis