Browse Element(s) Details


Os.22567.1.S1_at

Description gb:AK062935.1
DB_XREF= gi:32972953
TID=Os.22567.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22567 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-109-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-B01, full insert sequence.
FL= gb:AK062935.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4566011/1114 kDa zinc-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45640Os.24566.1.S1_at11/116+27626770..27632039CCAAT-box binding factor HAP5 homolog, putative, expressed
LOC_Os06g45650Os.28022.1.S1_s_at11/116+27636557..27640580MADS-box protein ZMM17, putative, expressed
LOC_Os06g45650Os.37090.1.S1_x_at10/116+27636557..27640580MADS-box protein ZMM17, putative, expressed
LOC_Os06g45650Os.52495.1.S1_at9/116+27636557..27640580MADS-box protein ZMM17, putative, expressed
LOC_Os06g45650Os.38268.2.S1_s_at1/116+27636557..27640580MADS-box protein ZMM17, putative, expressed
LOC_Os06g45660Os.22567.1.S1_at11/116+27655876..2765801214 kDa zinc-binding protein, putative, expressed
LOC_Os06g45670Os.13875.1.S1_at11/116+27658072..27660168Glycine cleavage system H protein 1, mitochondrial precursor, putative, expressed
LOC_Os06g45680OsAffx.26553.1.S1_at11/116+27661323..27661827hypothetical protein
LOC_Os06g45680OsAffx.26553.1.S1_x_at11/116+27661323..27661827hypothetical protein
LOC_Os06g45690OsAffx.5117.1.S1_at11/116+27665634..27669509NB-ARC domain containing protein, expressed
LOC_Os06g45700NANA6+27671518..27671769retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g45710Os.11118.1.S1_at11/116+27675392..27678753Phosphoglycerate kinase, cytosolic, putative, expressed
LOC_Os06g45720OsAffx.28121.1.S1_at11/116+27680410..27681489BTB/POZ domain containing protein
LOC_Os06g45730Os.55412.1.S1_at11/116+27682634..27684558BTB/POZ domain containing protein, expressed
LOC_Os06g45730OsAffx.30579.1.S1_x_at1/116+27682634..27684558BTB/POZ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005080molecular_functionprotein kinase C binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22567.1.S1_at--610--8151Chr06:27656921..27656945 (25 bp)
GGAAATTCCTTCTAATGTTGTCTAT
LOC_Os06g45660
Os.22567.1.S1_at--492--3891Chr06:27656992..27657016 (25 bp)
CTGTGCATGTTCTAGTCATCCCAAA
LOC_Os06g45660
Os.22567.1.S1_at--751--8271Chr06:27657280..27657304 (25 bp)
GGCATGTCGAAATTCTGGGCTATCT
LOC_Os06g45660
Os.22567.1.S1_at--836--4871Chr06:27657298..27657322 (25 bp)
GCTATCTTCTATACGCCGCGAAAAT
LOC_Os06g45660
Os.22567.1.S1_at--1105--1131Chr06:27657586..27657610 (25 bp)
AGTCTATCACCTGCACTTGCATGTA
LOC_Os06g45660
Os.22567.1.S1_at--28--8471Chr06:27657632..27657656 (25 bp)
TGGCCTGCTGGCTAATTAACCAAGT
LOC_Os06g45660
Os.22567.1.S1_at--1134--7971Chr06:27657658..27657682 (25 bp)
GGATGCTTTCTGTACTATTGCCTAA
LOC_Os06g45660
Os.22567.1.S1_at--1147--7731Chr06:27657738..27657762 (25 bp)
GGTGTTTTCTATCCATCTGTAACGT
LOC_Os06g45660
Os.22567.1.S1_at--135--731Chr06:27657774..27657798 (25 bp)
ATGATACCTTCACAACAGAGCCCGT
LOC_Os06g45660
Os.22567.1.S1_at--1035--7051Chr06:27657843..27657867 (25 bp)
GTAATTACTTGATTCGAGCCTCTAA
LOC_Os06g45660
Os.22567.1.S1_at--733--6811Chr06:27657869..27657893 (25 bp)
GTTTACATAATCGTTCGGCCACAAT
LOC_Os06g45660
Target Sequence 
GGAAATTCCTTCTAATGTTGTCTATGAGGATGAGAAAGTGCTGGCATTTAGAGATATTAATCCACAAGCCCCTGTGCATG
TTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGGCTGAACCAAGGCATGTCGAAATTCTGGGCTAT
CTTCTATACGCCGCGAAAATAGTGGCTGAGAAGGAAGGTATAGCTGAAGGGTACCGTGTCGTCATAAACAATGGACCTAA
AGGATGTCAATCAGTCTATCACCTGCACTTGCATGTACTAGGTGGAAGGCAGATGAAATGGCCTGCTGGCTAATTAACCA
AGTGGGATGCTTTCTGTACTATTGCCTAAGTTCTCTTGTAGTAAGACAATATGATCGGTTGAAGTAATACCCGCATTGGT
GAATGGTGTTTTCTATCCATCTGTAACGTCTTTGTTGTCAATGATACCTTCACAACAGAGCCCGTGAGAATGCTCAAAGA
ATCTGTTAGTGAGATTGTCTGGTCGTTCTGTAATTACTTGATTCGAGCCTCTAAAGTTTACATAATCGTTCGGCCACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22567.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis