Browse Element(s) Details


Os.23221.1.A1_at

Description gb:AK058669.1
DB_XREF= gi:32968687
TID=Os.23221.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23221 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-018-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-018-H01, full insert sequence.
FL= gb:AK058669.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1918011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19140OsAffx.25156.3.S1_at11/1112+11106360..11110460hypothetical protein
LOC_Os12g19140OsAffx.25156.1.S1_x_at3/1112+11106360..11110460hypothetical protein
LOC_Os12g19140OsAffx.25156.4.S1_x_at2/1112+11106360..11110460hypothetical protein
LOC_Os12g19140OsAffx.25156.5.S1_x_at2/1112+11106360..11110460hypothetical protein
LOC_Os12g19140OsAffx.31777.1.S1_x_at1/1112+11106360..11110460hypothetical protein
LOC_Os12g19140OsAffx.25156.2.S1_at1/1112+11106360..11110460hypothetical protein
LOC_Os12g19140OsAffx.25156.2.S1_x_at1/1112+11106360..11110460hypothetical protein
LOC_Os12g19150OsAffx.22947.2.S1_x_at6/1112+11113099..11117409retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19150OsAffx.22947.1.S1_x_at5/1112+11113099..11117409retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19150OsAffx.22947.3.S1_x_at5/1112+11113099..11117409retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19150OsAffx.22947.5.S1_x_at2/1112+11113099..11117409retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19160NANA12+11120452..11121387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19170NANA12+11130462..11130779hypothetical protein
LOC_Os12g19180Os.23221.1.A1_at11/1112+11135389..11138969expressed protein
LOC_Os12g19190NANA12+11140108..11143097transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g19200NANA12+11145943..11146302transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g19210NANA12+11148547..11149332transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g19220Os.47463.1.S1_x_at2/1112+11149626..11151784transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g19220Os.14491.2.S1_x_at1/1112+11149626..11151784transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g19230OsAffx.8299.1.S1_x_at1/1112+11154160..11154480hypothetical protein
LOC_Os12g19250OsAffx.1769.1.S1_at1/1112+11159459..11162452retrotransposon protein, putative, unclassified
LOC_Os12g19250OsAffx.20566.1.S1_at1/1112+11159459..11162452retrotransposon protein, putative, unclassified
LOC_Os12g19260OsAffx.19742.1.S1_at11/1112+11163149..11166667pentatricopeptide, putative, expressed
LOC_Os12g19260Os.14173.1.S1_at1/1112+11163149..11166667pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010026biological_processtrichome differentiation (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23221.1.A1_at--1127--8211Chr12:11137499..11137523 (25 bp)
GGAATTCGACACATATTTCTGCGCA
LOC_Os12g19180
Os.23221.1.A1_at--878--191Chr12:11137513..11137537 (25 bp)
ATTTCTGCGCATATGAGCCTTATGA
LOC_Os12g19180
Os.23221.1.A1_at--688--371Chr12:11137550..11137574 (25 bp)
ATCAAATTCACACGCTACTTGCAGC
LOC_Os12g19180
Os.23221.1.A1_at--238--6351Chr12:11138557..11138581 (25 bp)
GATGCTGCCACAATTGTTTTTGCCC
LOC_Os12g19180
Os.23221.1.A1_at--648--31Chr12:11138592..11138616 (25 bp)
ATTGGGACACCTATGGCAGCAGCAA
LOC_Os12g19180
Os.23221.1.A1_at--1111--9971Chr12:11138631..11138655 (25 bp)
TAGCGGATTGTACTCATTCTGGAAT
LOC_Os12g19180
Os.23221.1.A1_at--534--10071Chr12:11138662..11138686 (25 bp)
TAGGGTTGCACTTGAGCGAGTTCTT
LOC_Os12g19180
Os.23221.1.A1_at--133--6091Chr12:11138752..11138776 (25 bp)
GAGTAGGCTGCATTTAGTCTTAGTT
LOC_Os12g19180
Os.23221.1.A1_at--328--6051Chr12:11138792..11138816 (25 bp)
GAGATTTGGGTAGCCTTTTTCCAGC
LOC_Os12g19180
Os.23221.1.A1_at--1075--10351Chr12:11138807..11138831 (25 bp)
TTTTTCCAGCTCTTTACTTTCATCA
LOC_Os12g19180
Os.23221.1.A1_at--287--6591Chr12:11138872..11138896 (25 bp)
GATTCCAGTGATTACTTCTGTTACT
LOC_Os12g19180
Target Sequence 
GGAATTCGACACATATTTCTGCGCATATGAGCCTTATGAGCAGTGTTCAAGATCAAATTCACACGCTACTTGCAGCTCAA
GNGATGATAACTTGTGGAACAAGAATTCGCGGTTTGGCTCNCATTTGCTCTGCTGGAGGGGCCCTAAACAAGCCATCTAA
CAGGACAGAAAATGGATGCGCAAACTAGATGAATCANATAGATGCTGCCACAATTGTTTTTGCCCGGAGCCGGAAATTGG
GACACCTATGGCAGCAGCAATTTTGAGGGAAAAGTAGCGGATTGTACTCATTCTGGAATAGCTGATAGGGTTGCACTTGA
GCGAGTTCTTGTTCTTGGTGAACAACCAATGAACTTATGTTCAATCTGTAAGCTGCATACTAGCTTTTTGAAAGGGAGTA
GGCTGCATTTAGTCTTAGTTGCTCTTATTTGACAAGAGATTTGGGTAGCCTTTTTCCAGCTCTTTACTTTCATCAAAAGG
AATAATGCTGGCGGTCAGATGTACAGCATGGTAGTGATTCCAGTGATTACTTCTGTTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23221.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis