Browse Element(s) Details


Os.23232.1.S1_at

Description gb:AK069020.1
DB_XREF= gi:32979044
TID=Os.23232.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.23232 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-043-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013169J18, full insert sequence.
FL= gb:AK066811.1 gb:AK104850.1 gb:AK069020.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4421011/11SNF2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44160Os.27868.1.A1_s_at11/117+26392422..26395161transposon protein, putative, unclassified, expressed
LOC_Os07g44170OsAffx.28897.1.S1_at11/117+26395800..26397917pentatricopeptide, putative
LOC_Os07g44180Os.46402.1.S1_at11/117+26401979..26403015Hydrophobic protein LTI6B, putative, expressed
LOC_Os07g44190Os.13464.1.S1_at11/117+26405007..26407105H/ACA ribonucleoprotein complex subunit 4, putative, expressed
LOC_Os07g44200Os.52622.1.S1_at11/117+26411195..26412764DNA-binding storekeeper protein, putative, expressed
LOC_Os07g44210Os.23232.1.S1_at11/117+26415275..26427637SNF2 domain-containing protein, putative, expressed
LOC_Os07g44210OsAffx.6305.1.S1_at2/117+26415275..26427637SNF2 domain-containing protein, putative, expressed
LOC_Os07g44210OsAffx.15286.1.S1_at2/117+26415275..26427637SNF2 domain-containing protein, putative, expressed
LOC_Os07g44220OsAffx.28898.1.S1_at11/117+26429266..26429583hypothetical protein
LOC_Os07g44230Os.53888.1.S1_at11/117+26431006..26433562ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative, expressed
LOC_Os07g44240Os.14919.1.S1_at4/117+26437563..26441785transposon protein, putative, Mutator sub-class
LOC_Os07g44240OsAffx.29313.1.S1_at1/117+26437563..26441785transposon protein, putative, Mutator sub-class
LOC_Os07g44240Os.56216.1.S1_at1/117+26437563..26441785transposon protein, putative, Mutator sub-class
LOC_Os07g44250Os.12381.1.S1_s_at11/117+26443941..26444820Dirigent-like protein, expressed
LOC_Os07g44250Os.12381.1.S1_x_at11/117+26443941..26444820Dirigent-like protein, expressed
LOC_Os07g44250Os.43269.1.S1_x_at7/117+26443941..26444820Dirigent-like protein, expressed
LOC_Os07g44260OsAffx.5632.1.S1_x_at1/117+26448311..26448775Dirigent-like protein
LOC_Os07g44260OsAffx.5632.1.S1_at1/117+26448311..26448775Dirigent-like protein

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Gene Ontology Classification
GO idTypeName
GO:0006333biological_processchromatin assembly or disassembly
GO:0003677molecular_functionDNA binding
GO:0003682molecular_functionchromatin binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23232.1.S1_at--863--391Chr07:26426327..26426351 (25 bp)
ATCATGGACTCCAGGTGACCTTATT
LOC_Os07g44210
Os.23232.1.S1_at--1029--10391Chr07:26426347..26426371 (25 bp)
TTATTCAAGCCGAAGACCGTGCCCA
LOC_Os07g44210
Os.23232.1.S1_at--89--1791Chr07:26426362..26426386 (25 bp)
ACCGTGCCCATCGTATTGGTCAGGT
LOC_Os07g44210
Os.23232.1.S1_at--720--31Chr07:26426376..26426587 (25 bp)
ATTGGTCAGGTTTCTTCGGTGAACA
LOC_Os07g44210
Os.23232.1.S1_at--559--9971Chr07:26426593..26426617 (25 bp)
TACCTTCTTGCAAATGACACTGTGG
LOC_Os07g44210
Os.23232.1.S1_at--112--2611Chr07:26427275..26427299 (25 bp)
AACGCTGGATGTGTCCCAGAGCGAC
LOC_Os07g44210
Os.23232.1.S1_at--55--5451Chr07:26427389..26427413 (25 bp)
GAACCCTAGGTTCTGACATTTCTCA
LOC_Os07g44210
Os.23232.1.S1_at--1085--3571Chr07:26427405..26427429 (25 bp)
CATTTCTCAGGGTTTTTAGCTCTAC
LOC_Os07g44210
Os.23232.1.S1_at--119--10253Chr10:12009657..12009677 (21 bp)
TTTGGCAATTGGCATGACCCTCTTG
NONE
Os.23232.1.S1_at--665--7751Chr07:26427507..26427531 (25 bp)
GGTGTTATGATCACAGCCATGCTGT
LOC_Os07g44210
Os.23232.1.S1_at--763--10791Chr07:26427535..26427559 (25 bp)
TTGTATTACCCAGCTAAATGCCCGT
LOC_Os07g44210
Target Sequence 
ATCATGGACTCCAGGTGACCTTATTCAAGCCGAAGACCGTGCCCATCGTATTGGTCAGGTTTCTTCGGTGAACATATATT
ACCTTCTTGCAAATGACACTGTGGATGACATTATATGGGACGTTGTTCAAGGCAAACTTGAGAATTTGGGACAGATGCTG
GATGGGCAGGAGAAAACGCTGGATGTGTCCCAGAGCGACACTAGGCCCAGCCCTTCCAAGCAGAAGACGCTCGACGCCTA
CCTCAAGCGATGCAGCAATTCCACAGAAGCTGATCAGCCCAAGCTCAAGAACCCTAGGTTCTGACATTTCTCAGGGTTTT
TAGCTCTACTATGTTTTTGTTTGGCAATTGGCATGACCCTCTTGCCTTAAACGAAGGAATGCTGCAGTGTCAGGTAGCTG
TGTGTTGGTGTTATGATCACAGCCATGCTGTATTTTGTATTACCCAGCTAAATGCCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23232.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis