Browse Element(s) Details


Os.2328.1.S1_at

Description gb:AK073712.1
DB_XREF= gi:32983735
TID=Os.2328.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.2328 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 3-phosphoinositide-dependent protein kinase-1 (OSJNBb0008G24.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033061A22, full insert sequence.
FL= gb:AK062100.1 gb:AK073712.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6523011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65190OsAffx.11741.1.S1_x_at11/111+38155266..38159206POT family protein, expressed
LOC_Os01g65190Os.50574.1.S1_at1/111+38155266..38159206POT family protein, expressed
LOC_Os01g65190Os.53707.1.S1_x_at1/111+38155266..38159206POT family protein, expressed
LOC_Os01g65200Os.26151.1.S1_s_at11/111+38161048..38163757POT family protein, expressed
LOC_Os01g65200Os.33629.1.S1_a_at11/111+38161048..38163757POT family protein, expressed
LOC_Os01g65210OsAffx.23922.1.S1_at11/111+38163986..38170513POT family protein, expressed
LOC_Os01g65210Os.7141.1.S1_at11/111+38163986..38170513POT family protein, expressed
LOC_Os01g65220Os.5254.1.S1_x_at11/111+38171772..381796275'-3' exoribonuclease, putative, expressed
LOC_Os01g65230Os.2328.1.S1_at11/111+38180254..38184359Protein kinase domain containing protein, expressed
LOC_Os01g65240Os.31886.1.S1_at11/111+38186938..38188979transposon protein, putative, Pong sub-class, expressed
LOC_Os01g65250OsAffx.21702.1.S1_at11/111+38189484..38191600transposon protein, putative, Pong sub-class
LOC_Os01g65260Os.30033.1.S1_at11/111+38192962..38194909Amidophosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os01g65270OsAffx.9516.1.S1_at11/111+38201305..38202138retrotransposon protein, putative, unclassified
LOC_Os01g65280OsAffx.2412.1.S1_x_at11/111+38205285..38206586hypothetical protein
LOC_Os01g65280OsAffx.2412.1.S1_at11/111+38205285..38206586hypothetical protein
LOC_Os01g65290OsAffx.12779.1.S1_at11/111+38208253..38210756retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0045860biological_processpositive regulation of protein kinase activity
GO:0004676molecular_function3-phosphoinositide-dependent protein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
GO:0035091molecular_functionphosphoinositide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2328.1.S1_at--56--7811Chr01:38180806..38180830 (25 bp)
GGTCTGATGACCCAAGTGAACTCAA
LOC_Os01g65230
Os.2328.1.S1_at--71--6891Chr01:38180774..38180798 (25 bp)
GTATCAAACTCTTCGCATTTCAGGA
LOC_Os01g65230
Os.2328.1.S1_at--331--3351Chr01:38180669..38180690 (22 bp)
CACGCCAAAGAAGGTGTCATCGTTT
LOC_Os01g65230
Os.2328.1.S1_at--1067--2391Chr01:38180635..38180659 (25 bp)
AAACAGCGCGCCTGGCAATGGAAGA
LOC_Os01g65230
Os.2328.1.S1_at--177--5371Chr01:38180602..38180626 (25 bp)
GAAGACCTACAACGCTGCCAGAAGA
LOC_Os01g65230
Os.2328.1.S1_at--27--1431Chr01:38180580..38180604 (25 bp)
AGAACTGACCATGACCAACTCAAGA
LOC_Os01g65230
Os.2328.1.S1_at--680--551Chr01:38180513..38180537 (25 bp)
ATCCTTTTCGCCTGGAGGAACATGG
LOC_Os01g65230
Os.2328.1.S1_at--484--10231Chr01:38180481..38180505 (25 bp)
TATTGTTCCTGGTCTCCTGCATCTG
LOC_Os01g65230
Os.2328.1.S1_at--733--4951Chr01:38180463..38180487 (25 bp)
GCATCTGTGCCCGATTGCAACGAAG
LOC_Os01g65230
Os.2328.1.S1_at--267--8251Chr01:38180427..38180451 (25 bp)
GGCACATCGATGGATGTTCCTACAT
LOC_Os01g65230
Os.2328.1.S1_at--759--4251Chr01:38180386..38180410 (25 bp)
CCGGCCCTGCTAAATTCTCTTATAG
LOC_Os01g65230
Target Sequence 
GGTCTGATGACCCAAGTGAACTCAATGTGCAAGTATCAAACTCTTCGCATTTCAGGATATGCACGCCAAAGAAGGTGTCA
TCGTTTGAGGATGCAAAACAGCGCGCCTGGCAATGGAAGAAGGCGATCGAAGACCTACAACGCTGCCAGAAGAACTGACC
ATGACCAACTCAAGACGTCAAAATGGTGATATTAAGCATTGTGTATACACCATAGCCATCCTTTTCGCCTGGAGGAACAT
GGGGGAGACTATTGTTCCTGGTCTCCTGCATCTGTGCCCGATTGCAACGAAGTCTCANCAGTTGGCACATCGATGGATGT
TCCTACATTTTTTTGTTTTCTTTTCCGGCCCTGCTAAATTCTCTTATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2328.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis