Browse Element(s) Details


Os.23302.1.A1_at

Description gb:CB632437
DB_XREF= gi:29627426
DB_XREF=OSIIEb10K18.r
CLONE=OSIIEb10K18
TID=Os.23302.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23302 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_175072.1 (A.thaliana) EnSpm-like transposon protein, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2636011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26329Os.24831.3.S1_x_at6/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329Os.24831.1.S1_x_at5/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329OsAffx.29757.4.S1_x_at4/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329Os.24831.4.S1_x_at4/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329Os.49936.2.A1_at3/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329Os.52311.1.S1_at3/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329Os.53142.1.S1_at3/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329OsAffx.20823.2.S1_at2/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329OsAffx.20823.2.S1_x_at2/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329OsAffx.29757.1.S1_x_at2/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329OsAffx.29757.3.S1_x_at1/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329OsAffx.1651.1.S1_x_at1/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329OsAffx.22945.1.S1_at1/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329Os.23706.1.A1_x_at1/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329Os.24831.3.S1_s_at1/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329OsAffx.1651.1.S1_at1/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26350NANA3+15042954..15049278transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g26360OsAffx.13052.1.S1_at11/113+15049574..15054050expressed protein
LOC_Os03g26360Os.23302.1.A1_at11/113+15049574..15054050expressed protein
LOC_Os03g26360OsAffx.13052.2.S1_at2/113+15049574..15054050expressed protein
LOC_Os03g26370NANA3+15054822..15055388Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g26380Os.14919.1.S1_at5/113+15056464..15059399hypothetical protein
LOC_Os03g26380Os.56216.1.S1_at2/113+15056464..15059399hypothetical protein
LOC_Os03g26390NANA3+15060630..15066767retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g26400OsAffx.21897.5.S1_x_at4/113+15067056..15069980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g26420OsAffx.13053.1.S1_at11/113+15075879..15076541Zinc finger, C3HC4 type family protein

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Gene Ontology Classification
GO idTypeName
GO:0009639biological_processresponse to red or far red light
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23302.1.A1_at--738--9033Chr03:15051139..15051163 (25 bp)
TGCACCTGAAGATCTTTTGCTTCTG
LOC_Os03g26360
Os.23302.1.A1_at--697--4911Chr03:15051157..15051181 (25 bp)
GCTTCTGTTATGTCCCTTTCTTAAA
LOC_Os03g26360
Os.23302.1.A1_at--68--2551Chr03:15051181..15051706 (25 bp)
AACTCCACTGTTATCACTTGGTAGT
LOC_Os03g26360
Os.23302.1.A1_at--1092--10851Chr03:15051699..15051723 (25 bp)
TTGGTAGTGCCCTTCAACATATTGC
LOC_Os03g26360
Os.23302.1.A1_at--51--2091Chr03:15051715..15051739 (25 bp)
ACATATTGCCTGATTCCACTACTAT
LOC_Os03g26360
Os.23302.1.A1_at--756--2291Chr03:15051745..15051769 (25 bp)
AAATGGACCTGACAACATGGCGACA
LOC_Os03g26360
Os.23302.1.A1_at--1028--2111Chr03:15051759..15051783 (25 bp)
ACATGGCGACACTGCGATATCAAAT
LOC_Os03g26360
Os.23302.1.A1_at--775--10091Chr03:15051882..15051906 (25 bp)
TAGGCTACTGCCTTGAATCACAACC
LOC_Os03g26360
Os.23302.1.A1_at--583--2211Chr03:15051901..15051925 (25 bp)
ACAACCATAGCCTTTGCCTTTGGAT
LOC_Os03g26360
Os.23302.1.A1_at--943--7931Chr03:15051963..15051987 (25 bp)
GGATTTTTTCCCTGGATGATCTTAT
LOC_Os03g26360
Os.23302.1.A1_at--496--10691Chr03:15052016..15052040 (25 bp)
TTGCTAGATCTAACTACTTCTGTAG
LOC_Os03g26360
Target Sequence 
TGCACCTGAAGATCTTTTGCTTCTGTTATGTCCCTTTCTTAAAACTCCACTGTTATCACTTGGTAGTGCCCTTCAACATA
TTGCCTGATTCCACTACTATAGGAAAAATGGACCTGACAACATGGCGACACTGCGATATCAAATACCATGTCAAGTTGAA
GCCTTACATTGAACAAACAATGGCTTATTAATTACTGTAAATGCCATGAATGTATTAAAATGTCAAAAGATTCACATCTA
AATAGGCTACTGCCTTGAATCACAACCATAGCCTTTGCCTTTGGATATATTTGTTGATTTAAATGTAATTATATTTGACA
TATGGATTTTTTCCCTGGATGATCTTATTTGACATATGGATTATTGTAATTGTATTTTGCTAGATCTAACTACTTCTGTA
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23302.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis