Browse Element(s) Details


Os.24410.1.S1_s_at

Description gb:CA761798
DB_XREF= gi:25805837
DB_XREF=BR060013A20C07.ab1
CLONE=BR060013A20C07.ab1
TID=Os.24410.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.24410 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g085691/11Cycloartenol synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08530Os.9021.4.S1_at9/1111+4501064..4503989expressed protein
LOC_Os11g08536OsAffx.7046.1.S1_at11/1111+4505263..4506128hypothetical protein
LOC_Os11g08542NANA11+4506684..4509654retrotransposon protein, putative, unclassified
LOC_Os11g08550OsAffx.11259.1.S1_at1/1111+4510000..4515641retrotransposon protein, putative, unclassified
LOC_Os11g08569Os.12282.1.S1_a_at10/1111+4518244..4553813Cycloartenol synthase, putative, expressed
LOC_Os11g08569Os.24410.1.S1_s_at1/1111+4518244..4553813Cycloartenol synthase, putative, expressed
LOC_Os11g08569Os.6502.1.A1_x_at1/1111+4518244..4553813Cycloartenol synthase, putative, expressed
LOC_Os11g08569Os.31929.5.S1_at1/1111+4518244..4553813Cycloartenol synthase, putative, expressed
LOC_Os11g08569Os.6502.1.A1_at1/1111+4518244..4553813Cycloartenol synthase, putative, expressed
LOC_Os11g08590OsAffx.30887.1.S1_at11/1111+4553405..4562257expressed protein
LOC_Os11g08590Os.17282.1.S1_at1/1111+4553405..4562257expressed protein
LOC_Os11g08590Os.27502.1.S1_at1/1111+4553405..4562257expressed protein
LOC_Os11g08590Os.52782.1.S1_at1/1111+4553405..4562257expressed protein
LOC_Os11g08600OsAffx.30888.1.S1_at11/1111+4565018..4567366hypothetical protein
LOC_Os11g08610Os.56258.1.S1_at1/1111+4572750..4579634retrotransposon protein, putative, unclassified
LOC_Os11g08610OsAffx.7914.1.S1_at1/1111+4572750..4579634retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0019745biological_processpentacyclic triterpenoid biosynthesis
GO:0016871molecular_functioncycloartenol synthase activity
GO:0042299molecular_functionlupeol synthase activity
GO:0042300molecular_functionbeta-amyrin synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24410.1.S1_s_at--570--9851NONE
TACAAGATCCATTTCGACAGCGTCG
NONE
Os.24410.1.S1_s_at--710--571Chr03:15757344..15757368 (25 bp)
ATCCATTTCGACAGCGTCGTCTTCA
NONE
Os.24410.1.S1_s_at--147--4651Chr03:15757330..15757355 (25 bp)
GCGTCGTCTTCATCGGGCTCGTCAA
NONE
Os.24410.1.S1_s_at--174--8331NONE
GGCTCGTCAAGCCTGATATTGAAGG
NONE
Os.24410.1.S1_s_at--37--4651Chr03:15756806..15756829 (24 bp)
GCGTCATGTACGTGCTAGCTTATAC
NONE
Os.24410.1.S1_s_at--526--3991NONE
CGTGCTAGCTTATACTACTTCCGTC
NONE
Os.24410.1.S1_s_at--557--2431NONE
AAAAGTCAACTTCCAGAGATCAACT
NONE
Os.24410.1.S1_s_at--761--6031NONE
GAGATCAACTTGGATAAGCATTTAT
NONE
Os.24410.1.S1_s_at--889--4931NONE
GCATTTATCCAGATCGATTCATACC
NONE
Os.24410.1.S1_s_at--812--6551Chr03:15756723..15756747 (25 bp)
GATTCATACCTAGAAGTTATCTTAT
NONE
Os.24410.1.S1_s_at--937--8112Chr11:4553062..4553311 (25 bp)
GGACGGAGGGTGTATATATATCTGT
LOC_Os11g08569
Target Sequence 
TACAAGATCCATTTCGACAGCGTCGTCTTCATCGGGCTCGTCAAGCCTGATATTGAAGGCGATCTTNCATGTCGATCGAC
GTACAGCTNCGGCAACAAAGCTCACGNNTCAAGNTCAGTGACAACACTACTGNCTCTTAATTTTCCNGTCAGCAACTTCA
NCAACAGANCCGNCTGCANCTGAGCTCGNTGNCTCACGTCCNTGCAGCATGGNCAGANGGNCCNCCNGANGATATATTTA
CTACGGCATCCAATCCGTGTTTGCGTCATGTACGTGCTAGCTTATACTACTTCCGTCCCATAAAAAGTCAACTTCCAGAG
ATCAACTTGGATAAGCATTTATCCAGATCGATTCATACCTAGAAGTTATCTTATTTTTGGACGGAGGGTGTATATATATC
TGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24410.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis