Browse Element(s) Details


Os.26455.1.S1_at

Description gb:AK066307.1
DB_XREF= gi:32976325
TID=Os.26455.1
CNT=29
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26455 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) RNA polymerase alpha subunit (P0557A01.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013060A03, full insert sequence.
FL= gb:AK066307.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1679011/11DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os10g213305/11DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g579442/11DNA-directed RNA polymerase alpha chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g16770Os.46404.1.S1_x_at11/114+9116019..9117080Photosystem Q, putative, expressed
LOC_Os04g16774OsAffx.32196.1.A1_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32199.1.S1_x_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32287.1.A1_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32195.1.A1_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32200.1.A1_x_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32197.1.A1_x_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32233.1.A1_x_at9/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.20465.1.A1_x_at6/114+9131675..9135405expressed protein
LOC_Os04g16780OsAffx.32287.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32337.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32196.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780Os.46437.1.S1_s_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780Os.46267.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780Os.26688.1.S1_s_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32197.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32195.1.S1_x_at9/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32199.1.A1_x_at6/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16790OsAffx.32331.1.S1_x_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790Os.26455.2.S1_s_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32330.1.A1_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790Os.26455.1.S1_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32332.1.S1_x_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32333.1.S1_x_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32334.1.S1_x_at5/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16800OsAffx.30473.1.S1_x_at11/114+9156196..9158627Photosystem II D2 protein, putative
LOC_Os04g16800OsAffx.30473.2.S1_x_at9/114+9156196..9158627Photosystem II D2 protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0000312cellular_componentplastid small ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26455.1.S1_at--695--5238Chr12:3115491..3115515 (25 bp)
GAATAAGTTCTAGTTTTAAATCCAT
NONE
Os.26455.1.S1_at--523--6737Chr08:9262709..9262733 (25 bp)
GTTCTAGTTTTAAATCCATTGCAAT
NONE
Os.26455.1.S1_at--702--10196Chr08:9262808..9262832 (25 bp)
TATTTTCGCGAAATGGATCATAATA
NONE
Os.26455.1.S1_at--1109--1016Chr08:9262844..9262868 (25 bp)
AGGTATCTAGGGAAGATTCACTTGG
NONE
Os.26455.1.S1_at--1084--2816Chr08:9262868..9262892 (25 bp)
GAAGTAACTATTTCCTAGATACCTA
NONE
Os.26455.1.S1_at--354--3696Chr08:9262875..9262899 (25 bp)
CTATTTCCTAGATACCTATGCACGG
NONE
Os.26455.1.S1_at--436--6496Chr08:9262885..9262909 (25 bp)
GATACCTATGCACGGTACTTCACGA
NONE
Os.26455.1.S1_at--341--1756Chr08:9262888..9262912 (25 bp)
ACCTATGCACGGTACTTCACGATTG
NONE
Os.26455.1.S1_at--408--10136Chr08:9262891..9262915 (25 bp)
TATGCACGGTACTTCACGATTGAAT
NONE
Os.26455.1.S1_at--643--5096Chr08:9262894..9262918 (25 bp)
GCACGGTACTTCACGATTGAATGAA
NONE
Os.26455.1.S1_at--146--7856Chr08:9262898..9262922 (25 bp)
GGTACTTCACGATTGAATGAATCAA
NONE
Target Sequence 
GAATAAGTTCTAGTTTTAAATCCATTGCAATTTTTTCCTCTTCNTTCTTTTTCGAGTTAGAATAAAAANAAAAAANAAAA
CANTTTTGCATCTTNGGGACANTCTATATTTTCGCGAAATGGATCATAATAAAATAGATTATAGGTATCTAGGGAAGATT
CACTTGGAAGTAACTATTTCCTAGATACCTATGCACGGTACTTCACGATTGAATGAATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26455.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis