Browse Element(s) Details


Os.26460.2.S1_x_at

Description gb:AK059042.1
DB_XREF= gi:32969060
TID=Os.26460.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26460 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0520B06.24 (P0520B06.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-D05, full insert sequence.
FL= gb:AK059042.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3283010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32780Os.7535.1.S1_at11/111+18317674..18320608universal stress protein family protein, expressed
LOC_Os01g32790Os.13027.1.S1_at9/111+18321451..18324615expressed protein
LOC_Os01g32800Os.22605.1.S1_at11/111+18326150..18329709PCI domain containing protein, expressed
LOC_Os01g32810OsAffx.21149.1.S1_x_at7/111+18331624..18331974hypothetical protein
LOC_Os01g32830Os.26460.1.S1_a_at11/111+18340522..18343873expressed protein
LOC_Os01g32830Os.26460.2.S1_x_at10/111+18340522..18343873expressed protein
LOC_Os01g32830Os.53828.1.S1_at1/111+18340522..18343873expressed protein
LOC_Os01g32840Os.53269.1.S1_at11/111+18348854..18351596expressed protein
LOC_Os01g32840OsAffx.21148.2.S1_at9/111+18348854..18351596expressed protein
LOC_Os01g32840OsAffx.18305.1.S1_x_at1/111+18348854..18351596expressed protein
LOC_Os01g32849Os.54264.1.S1_at11/111+18353418..18357190expressed protein
LOC_Os01g32860OsAffx.11288.1.S1_at2/111+18358262..18359463hypothetical protein
LOC_Os01g32870OsAffx.11289.1.S1_x_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870Os.14751.1.S1_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870OsAffx.11289.1.S1_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870Os.17037.3.S1_x_at1/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26460.2.S1_x_at--933--10531Chr01:18343196..18343220 (25 bp)
TTCATGGACTTCTTCGAGCCGGCCA
LOC_Os01g32830
Os.26460.2.S1_x_at--277--6431NONE
GATCTTCCTCATCATTTTTGGTGGC
NONE
Os.26460.2.S1_x_at--293--10731Chr01:18342411..18342435 (25 bp)
TTGCTTCACTCATGGTGGCCGGATA
LOC_Os01g32830
Os.26460.2.S1_x_at--806--7951Chr01:18342391..18342415 (25 bp)
GGATACACAGCACTCACCGTGAGGA
LOC_Os01g32830
Os.26460.2.S1_x_at--119--10811Chr01:18342363..18342387 (25 bp)
TTGTCCAGACACAGCTTATACCAGC
LOC_Os01g32830
Os.26460.2.S1_x_at--722--10411Chr01:18342348..18342372 (25 bp)
TTATACCAGCTGAGCCGATGAGCAA
LOC_Os01g32830
Os.26460.2.S1_x_at--227--6711Chr01:18342314..18342338 (25 bp)
GTTCGCGACGCTGGAATTCTGGGCC
LOC_Os01g32830
Os.26460.2.S1_x_at--903--10811Chr01:18342276..18342300 (25 bp)
TTGTCGCATCGTTTGCTGTTGCGTA
LOC_Os01g32830
Os.26460.2.S1_x_at--34--8811Chr01:18342260..18342284 (25 bp)
TGTTGCGTATGTTAACCCCACAGCG
LOC_Os01g32830
Os.26460.2.S1_x_at--127--8511Chr01:18342233..18342257 (25 bp)
TGGCACCACGGCAAGAACATGTCTT
LOC_Os01g32830
Os.26460.2.S1_x_at--531--4291Chr01:18342200..18342224 (25 bp)
CCTCGCTTCAACTGTACTGGGATAC
LOC_Os01g32830
Target Sequence 
TTCATGGACTTCTTCGAGCCGGCCACCCTCTTCATCCAGAGGTGGCTGCCCCTCTTCTACGTCCCTTCCCTGGTCGTCCT
GCCGCTCGCCGTCAGGGACGTCCCGGCTGCTTCCGGCCTCAAGATCTTCCTCATCATTTTTGGTGGCTGGTTTGCTTCAC
TCATGGTGGCCGGATACACAGCACTCACCGTGAGGAAGATTGTCCAGACACAGCTTATACCAGCTGAGCCGATGAGCAAG
CCGTCTCCGTTCGCGACGCTGGAATTCTGGGCCTGGGGTGCTGTCTTTGTCGCATCGTTTGCTGTTGCGTATGTTAACCC
CACAGCGCTTGGCACCACGGCAAGAACATGTCTTCCTTTCCTCCTCGCTTCAACTGTACTGGGATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26460.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis