Browse Element(s) Details

Os.26592.1.S1_s_at

Description

gb:AK059592.1
DB_XREF= gi:32969610
TID=Os.26592.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26592 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Photosystem II P680 chlorophyll A apoprotein (OSJNAb0075K12.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-D03, full insert sequence.
FL= gb:AK059592.1 gb:AK073727.1 gb:AK104598.1 gb:AK060792.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os09g04680	11/11	Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os10g21310	11/11	Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os06g39710	11/11	Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os08g15260	11/11	Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os12g10600	11/11	Photosystem II P680 chlorophyll A apoprotein, putative

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os09g04624	OsAffx.17566.1.S1_at	11/11	9	+	2457920..2473678	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g04624	Os.51006.1.S1_at	11/11	9	+	2457920..2473678	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g04624	Os.51006.2.S1_x_at	11/11	9	+	2457920..2473678	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g04640	OsAffx.22452.1.S1_x_at	1/11	9	+	2474500..2476891	hypothetical protein
LOC_Os09g04650	OsAffx.7693.1.S1_x_at	1/11	9	+	2477779..2478042	hypothetical protein
LOC_Os09g04660	Os.38764.1.S1_x_at	8/11	9	+	2480419..2484993	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660	Os.54151.1.S1_x_at	2/11	9	+	2480419..2484993	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660	Os.45173.1.S1_x_at	2/11	9	+	2480419..2484993	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660	OsAffx.31892.2.S1_x_at	1/11	9	+	2480419..2484993	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660	OsAffx.17842.1.S1_at	1/11	9	+	2480419..2484993	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660	OsAffx.29376.1.S1_x_at	1/11	9	+	2480419..2484993	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04670	Os.37769.1.S1_at	11/11	9	+	2488844..2492529	expressed protein
LOC_Os09g04680	Os.26592.1.S1_s_at	11/11	9	+	2493946..2495364	Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04680	Os.26592.2.A1_s_at	8/11	9	+	2493946..2495364	Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04680	Os.26592.3.S1_x_at	6/11	9	+	2493946..2495364	Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04680	Os.26592.2.A1_x_at	4/11	9	+	2493946..2495364	Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04690	OsAffx.6175.1.S1_at	11/11	9	+	2496167..2496809	hypothetical protein
LOC_Os09g04700	OsAffx.17569.1.S1_at	11/11	9	+	2499021..2499313	hypothetical protein
LOC_Os09g04710	Os.20237.1.S1_at	10/11	9	+	2500675..2503379	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g04720	Os.53719.1.S1_at	11/11	9	+	2504646..2507270	SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os09g04720	OsAffx.17570.1.S1_s_at	11/11	9	+	2504646..2507270	SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os09g04720	OsAffx.17570.1.S1_at	1/11	9	+	2504646..2507270	SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os09g04730	Os.8274.1.S1_at	10/11	9	+	2511446..2516209	oxidoreductase, short chain dehydrogenase/reductase family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0010207	biological_process	photosystem II assembly
GO:0019684	biological_process	photosynthesis, light reaction
GO:0009539	cellular_component	photosystem II reaction center
GO:0016168	molecular_function	chlorophyll binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.26592.1.S1_s_at--270--23	5	Chr12:5645651..5645675 (25 bp)	ATATTGCTGCGGGTACATTGGGCAT	LOC_Os12g10600
Os.26592.1.S1_s_at--947--909	5	Chr12:5645655..5645679 (25 bp)	TGCTGCGGGTACATTGGGCATATTA	LOC_Os12g10600
Os.26592.1.S1_s_at--776--701	6	Chr12:5645663..5645687 (25 bp)	GTACATTGGGCATATTAGCGGGCCT	LOC_Os12g10600
Os.26592.1.S1_s_at--409--1083	6	Chr12:5645668..5645692 (25 bp)	TTGGGCATATTAGCGGGCCTATTCC	LOC_Os12g10600
Os.26592.1.S1_s_at--163--19	6	Chr12:5645674..5645698 (25 bp)	ATATTAGCGGGCCTATTCCATCTTA	LOC_Os12g10600
Os.26592.1.S1_s_at--296--999	5	Chr12:5645678..5645702 (25 bp)	TAGCGGGCCTATTCCATCTTAGTGT	LOC_Os12g10600
Os.26592.1.S1_s_at--979--749	5	Chr12:5645682..5645706 (25 bp)	GGGCCTATTCCATCTTAGTGTCCGT	LOC_Os12g10600
Os.26592.1.S1_s_at--1001--367	6	Chr12:5645686..5645710 (25 bp)	CTATTCCATCTTAGTGTCCGTCCAC	LOC_Os12g10600
Os.26592.1.S1_s_at--67--957	6	Chr12:5645694..5645718 (25 bp)	TCTTAGTGTCCGTCCACCTCAACGT	LOC_Os12g10600
Os.26592.1.S1_s_at--434--745	5	Chr12:5645699..5645723 (25 bp)	GTGTCCGTCCACCTCAACGTCTATA	LOC_Os12g10600
Os.26592.1.S1_s_at--379--189	6	Chr12:5645715..5645739 (25 bp)	ACGTCTATACAAAGGATTACGTATG	LOC_Os12g10600

Target Sequence

ATATTGCTGCGGGTACATTGGGCATATTAGCGGGCCTATTCCATCTTAGTGTCCGTCCACCTCAACGTCTATACAAAGGA
TTACGTATG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis