Browse Element(s) Details


Os.27016.3.S1_x_at

Description gb:NM_192993.1
DB_XREF= gi:34913069
GEN=P0013G02.27
TID=Os.27016.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27016 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative glycolipid alpha-mannosyltransferase (P0013G02.27), mRNA.
PROD=putative glycolipid alpha-mannosyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3981011/11mannosyltransferase, putative, expressed
LOC_Os02g021104/11dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39770Os.45999.1.S1_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.6325.2.A1_x_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.6325.1.A1_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.45999.1.S1_x_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39770Os.6325.1.A1_x_at11/111+22754682..22757673Calcineurin B-like protein 10, putative, expressed
LOC_Os01g39780Os.57332.1.S1_at10/111+22762869..22765239expressed protein
LOC_Os01g39780OsAffx.20535.1.S1_at1/111+22762869..22765239expressed protein
LOC_Os01g39790Os.9190.1.S1_at11/111+22765891..22768813Esterase, putative, expressed
LOC_Os01g39790OsAffx.9086.1.S1_at2/111+22765891..22768813Esterase, putative, expressed
LOC_Os01g39800Os.9781.2.S1_x_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.2.S1_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.1.S1_at11/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39800Os.9781.1.S1_x_at10/111+22773077..22776666Esterase, putative, expressed
LOC_Os01g39810Os.27016.2.S1_at11/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39810Os.27016.3.S1_x_at11/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39810Os.27016.1.S2_x_at10/111+22777345..22783080mannosyltransferase, putative, expressed
LOC_Os01g39820Os.27382.2.S1_at3/111+22781987..22783194hypothetical protein
LOC_Os01g39830Os.18562.1.S1_at11/111+22793448..22799419Beta-galactosidase precursor, putative, expressed
LOC_Os01g39840Os.36418.1.S1_at11/111+22799517..22801260expressed protein
LOC_Os01g39850Os.38429.1.S1_at8/111+22801584..22803048Histone-like transcription factor and archaeal histone family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006505biological_processGPI anchor metabolism
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0000030molecular_functionmannosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27016.3.S1_x_at--919--832Chr02:625483..625507 (25 bp)
ATGGAGGCTTGCAGGTCTTATTGTC
LOC_Os02g02110
Os.27016.3.S1_x_at--270--1472Chr02:625543..625658 (25 bp)
AGAATTCAGGTTTGTTCTCCCGGTG
LOC_Os02g02110
Os.27016.3.S1_x_at--1089--7771Chr01:22780032..22780056 (25 bp)
GGTGCTTCCTTTTATGTTCATGTTC
LOC_Os01g39810
Os.27016.3.S1_x_at--615--1011Chr01:22780126..22780150 (25 bp)
AGGTTGAAGCTCTCTGTCATTCTGC
LOC_Os01g39810
Os.27016.3.S1_x_at--1115--6331Chr01:22780355..22780379 (25 bp)
GATGCTATGCTTTATCTATCACGAG
LOC_Os01g39810
Os.27016.3.S1_x_at--44--9832Chr02:626019..626043 (25 bp)
TAAAGAGTGTCCTCTTCCTTATGCC
LOC_Os02g02110
Os.27016.3.S1_x_at--324--9191Chr01:22780424..22780448 (25 bp)
TGCCATTCGACACCTTATTACTCTA
LOC_Os01g39810
Os.27016.3.S1_x_at--771--131Chr01:22780455..22780479 (25 bp)
ATTACAACCTACCTATGCGCTTTTT
LOC_Os01g39810
Os.27016.3.S1_x_at--644--592Chr02:626090..626114 (25 bp)
ATGCGCTTTTTGGACTGTACTCCTA
LOC_Os02g02110
Os.27016.3.S1_x_at--758--7991Chr01:22780617..22780641 (25 bp)
GGATGAGTCAGACCGTTTCCTCATG
LOC_Os01g39810
Os.27016.3.S1_x_at--953--10291Chr01:22780632..22780656 (25 bp)
TTTCCTCATGAACCCAGCAGATTTT
LOC_Os01g39810
Target Sequence 
ATGGAGGCTTGCAGGTCTTATTGTCTGGGTATTAGTGGTTTATAGCATACTTGGACATAAAGAATTCAGGTTTGTTCTCC
CGGTGCTTCCTTTTATGTTCATGTTCTCAGGACATAACTTAGCTGCAATGGCACAACTCAAGGGAAAAGGTCACAATGAG
AAAGGACGACTTTCGAGGTTGAAGCTCTCTGTCATTCTGCTCATCCTAACAAATGTTCCAATGGCTTTATATATGTCCTT
ATACCATCAAAGAGGAACTGAAGATGCTATGCTTTATCTATCACGAGAAGCCCATGATGGAAGAGTAAAGAGTGTCCTCT
TCCTTATGCCTTGCCATTCGACACCTTATTACTCTACATTACATTACAACCTACCTATGCGCTTTTTGGACTGTACTCCT
AGTGAAAACAAAGGGACCTTGGATGAGTCAGACCGTTTCCTCATGAACCCAGCAGATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27016.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis