Browse Element(s) Details


Os.27493.1.S1_at

Description gb:AK100637.1
DB_XREF= gi:32985846
TID=Os.27493.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.27493 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033052H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110E13, full insert sequence.
FL= gb:AK100637.1 gb:AK101617.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0708011/11Endonuclease/Exonuclease/phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07040Os.40855.2.S1_x_at6/113+3570109..3571383hypothetical protein
LOC_Os03g07050NANA3+3574337..3579231retrotransposon protein, putative, unclassified
LOC_Os03g07060NANA3+3581167..3581838glycerol-3-phosphate acyltransferase 8, putative
LOC_Os03g07070OsAffx.25001.1.S1_at11/113+3586043..3587368hypothetical protein
LOC_Os03g07070Os.36749.2.A1_at1/113+3586043..3587368hypothetical protein
LOC_Os03g07070Os.55736.1.S1_at1/113+3586043..3587368hypothetical protein
LOC_Os03g07080Os.27493.1.S1_at11/113+3595722..3601316Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g07090OsAffx.30774.1.S1_s_at11/113+3603944..3605013hypothetical protein
LOC_Os03g07100Os.4612.1.S1_at10/113+3605503..3607694Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g07100OsAffx.3160.1.S1_at5/113+3605503..3607694Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g07110Os.27089.1.S1_at11/113+3610246..3614636calmodulin-binding family protein, putative, expressed
LOC_Os03g07120OsAffx.25002.1.S1_at11/113+3616741..3621573lipase, putative, expressed
LOC_Os03g07120OsAffx.22506.1.A1_at1/113+3616741..3621573lipase, putative, expressed
LOC_Os03g07120OsAffx.13781.1.S1_at1/113+3616741..3621573lipase, putative, expressed
LOC_Os03g07130Os.34701.1.S1_s_at11/113+3626088..3630691ReMembR-H2 protein JR702, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27493.1.S1_at--955--2511Chr03:3600364..3600388 (25 bp)
AACTTCTGGATGAGGATAGCTTACG
LOC_Os03g07080
Os.27493.1.S1_at--202--3651Chr03:3600366..3600390 (25 bp)
CTTCTGGATGAGGATAGCTTACGGA
LOC_Os03g07080
Os.27493.1.S1_at--840--9451Chr03:3600368..3600392 (25 bp)
TCTGGATGAGGATAGCTTACGGAAA
LOC_Os03g07080
Os.27493.1.S1_at--809--6471Chr03:3600378..3600402 (25 bp)
GATAGCTTACGGAAAGACACTGCGC
LOC_Os03g07080
Os.27493.1.S1_at--1048--1531Chr03:3600381..3600405 (25 bp)
AGCTTACGGAAAGACACTGCGCTTC
LOC_Os03g07080
Os.27493.1.S1_at--643--10431Chr03:3600384..3600408 (25 bp)
TTACGGAAAGACACTGCGCTTCCTT
LOC_Os03g07080
Os.27493.1.S1_at--1133--1911Chr03:3600386..3600410 (25 bp)
ACGGAAAGACACTGCGCTTCCTTCA
LOC_Os03g07080
Os.27493.1.S1_at--213--8791Chr03:3600852..3600876 (25 bp)
TGTTCACTAGGAGGTGCTCTAGCGG
LOC_Os03g07080
Os.27493.1.S1_at--121--9691Chr03:3600855..3600879 (25 bp)
TCACTAGGAGGTGCTCTAGCGGCGT
LOC_Os03g07080
Os.27493.1.S1_at--548--5591Chr03:3601044..3601068 (25 bp)
GAAATATTTAATAGCATCATTGTTA
LOC_Os03g07080
Os.27493.1.S1_at--714--10491Chr03:3601051..3601075 (25 bp)
TTAATAGCATCATTGTTAGTTTTTT
LOC_Os03g07080
Target Sequence 
AACTTCTGGATGAGGATAGCTTACGGAAAGACACTGCGCTTCCTTCACCTGAATGGTCATCAGATCATATAGCACTCTTA
GCAGAATTTCGGTGCAAGCCTAGAGTTAGACGATGATACCCTAGGTACATCCATGTTCACTAGGAGGTGCTCTAGCGGCG
TGATTACCAACATACACAAGGGAACATACCCTCAGGGGAAGTAAGATTAACAATCTTAAGGAAGGGAGGATTGTTATGTT
CATTACTCTTTTCATTTCTGCCCTGATTTTTTTAGTGGCTCTAGCTGGATTGCGACTTTCTATAGGTGAAATATCCACGC
AAAGAGAAATATTTAATAGCATCATTGTTAGTTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27493.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis