Browse Element(s) Details


Os.27524.1.S1_at

Description gb:AK102595.1
DB_XREF= gi:32987804
TID=Os.27524.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.27524 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033098H20, full insert sequence.
FL= gb:AK063914.1 gb:AK102595.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0334011/11expressed protein
LOC_Os11g0357010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03270Os.5915.1.S1_at11/1112+1264350..1268139Protein of unknown function, DUF609 containing protein, expressed
LOC_Os12g03290Os.16683.1.S1_at8/1112+1268565..1273766AP2 domain containing protein, expressed
LOC_Os12g03304NANA12+1275104..1279591retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g03320OsAffx.31562.2.S1_s_at11/1112+1283830..1285605hypothetical protein
LOC_Os12g03330OsAffx.31563.1.S1_at11/1112+1290584..1290910hypothetical protein
LOC_Os12g03340Os.27524.1.S1_at11/1112+1291701..1299940expressed protein
LOC_Os12g03340Os.27524.2.S1_x_at8/1112+1291701..1299940expressed protein
LOC_Os12g03350Os.50919.1.S1_at4/1112+1301340..1302288hypothetical protein
LOC_Os12g03360Os.50942.1.S1_at6/1112+1304139..1305879Nse1 non-SMC component of SMC5-6 complex family protein
LOC_Os12g03370Os.50598.1.S1_at11/1112+1308547..1309703Harpin-induced protein 1 containing protein, expressed
LOC_Os12g03380OsAffx.30177.4.S1_at11/1112+1313533..1314090expressed protein
LOC_Os12g03380OsAffx.30177.1.S1_x_at2/1112+1313533..1314090expressed protein
LOC_Os12g03380Os.8747.3.S1_x_at2/1112+1313533..1314090expressed protein
LOC_Os12g03380Os.33750.2.S1_x_at1/1112+1313533..1314090expressed protein
LOC_Os12g03390OsAffx.31564.2.S1_at11/1112+1314753..1316248F-box domain containing protein, expressed
LOC_Os12g03400Os.6369.1.S1_at11/1112+1316605..1318869expressed protein
LOC_Os12g03410OsAffx.30800.1.S1_at11/1112+1319292..1325834Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g03410OsAffx.30800.2.S1_x_at2/1112+1319292..1325834Ulp1 protease family, C-terminal catalytic domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27524.1.S1_at--461--7912Chr12:1292218..1292242 (25 bp)
GGATTTTTTCAACCACCAGGTGCTG
LOC_Os12g03340
Os.27524.1.S1_at--296--10652Chr12:1292188..1292212 (25 bp)
TTCCCACCAGTGCAGGTTCAGCAAT
LOC_Os12g03340
Os.27524.1.S1_at--167--9172Chr12:1292156..1292180 (25 bp)
TGCCCAACGGCAATGATGATTCTAC
LOC_Os12g03340
Os.27524.1.S1_at--245--5092Chr12:1292107..1292131 (25 bp)
GCACCTTGTGCTAACTTTGTATATT
LOC_Os12g03340
Os.27524.1.S1_at--595--8852Chr12:1292062..1292086 (25 bp)
TGATCTGATAGTTGGCGAGTCCTGC
LOC_Os12g03340
Os.27524.1.S1_at--80--6532Chr12:1292002..1292026 (25 bp)
GATTTGTAGGATAGGCTTGCGGCTT
LOC_Os12g03340
Os.27524.1.S1_at--1127--912Chr12:1291990..1292014 (25 bp)
AGGCTTGCGGCTTATGTGATGTACA
LOC_Os12g03340
Os.27524.1.S1_at--979--10211Chr12:1291956..1291980 (25 bp)
TTTGGTCTGAGGAGTTTGTTCAACT
LOC_Os12g03340
Os.27524.1.S1_at--858--5692Chr12:1291906..1291930 (25 bp)
GACTTTACTTTTGTTTGCATAGCCA
LOC_Os12g03340
Os.27524.1.S1_at--1160--1352Chr12:1291753..1291777 (25 bp)
AGAGAAGCCATATATCCATAGATCC
LOC_Os12g03340
Os.27524.1.S1_at--799--572Chr12:1291740..1291764 (25 bp)
ATCCATAGATCCTTACTTGAAGTTG
LOC_Os12g03340
Target Sequence 
GGATTTTTTCAACCACCAGGTGCTGGNTTCTTCCCACCAGTGCAGGTTCAGCAATCTCCATCTGCCCAACGGCAATGATG
ATTCTACAACAATTGTTGGGCTATAAAGGAAGCACCTTGTGCTAACTTTGTATATTAAACAATAATCCCTGAGGATTGAT
CTGATAGTTGGCGAGTCCTGCNTCGTGAAGCAGGATTAATGCTTATGAATTGGGANGATTTGTAGGATAGGCTTGCGGCT
TATGTGATGTACAACTNTTCCTTTTGGTCTGAGGAGTTTGTTCAACTCTTCTTGNTTATGTGAAGTTAGTTAGACTTTAC
TTTTGTTTGCATAGCCAGATCTTATTNTTAGTCCTGAGGCAAACAAATGTNGGCATTACATTTNTTACTTAAAGAGGTGC
CCAAGTGAAAGAACNTTTTTGGGCTCCTCNATGGTAGAACTTACCTNTGGCTCTGTTAGTTTGCTAGAGAAGCCATATAT
CCATAGATCCTTACTTGAAGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27524.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis