Browse Element(s) Details


Os.27540.2.S1_x_at

Description gb:NM_188636.1
DB_XREF= gi:34904355
TID=Os.27540.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27540 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1319011/11Histidinol dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os04g517801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13150Os.27302.1.S1_x_at11/111+7321947..7328957metallo-beta-lactamase superfamily protein, expressed
LOC_Os01g13150Os.50317.1.S1_at5/111+7321947..7328957metallo-beta-lactamase superfamily protein, expressed
LOC_Os01g13160Os.10105.3.S1_x_at11/111+7330590..7336046expressed protein
LOC_Os01g13160Os.10105.2.S1_at11/111+7330590..7336046expressed protein
LOC_Os01g13160Os.10105.1.S1_at11/111+7330590..7336046expressed protein
LOC_Os01g13170Os.3627.1.S1_a_at10/111+7337519..7342104Ubiquitin-conjugating enzyme, putative, expressed
LOC_Os01g13180NANA1+7342713..7343780expressed protein
LOC_Os01g13190Os.27540.1.S1_at11/111+7345387..7348947Histidinol dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g13190Os.27540.2.S1_x_at11/111+7345387..7348947Histidinol dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g13200Os.12707.1.S1_at10/111+7349014..7354422elongation defective 1 protein, putative, expressed
LOC_Os01g13210Os.14122.1.S1_at11/111+7360465..7362913DREPP plasma membrane polypeptide family protein, expressed
LOC_Os01g13229OsAffx.31820.1.S1_x_at11/111+7366474..7377853Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13229OsAffx.31820.1.S1_at10/111+7366474..7377853Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13229Os.4195.1.S1_at3/111+7366474..7377853Cyclin, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0004399molecular_functionhistidinol dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27540.2.S1_x_at--1002--5132Chr04:30463175..30463657 (25 bp)
GCAAACCCAGTTCATGTTGCTGCTG
LOC_Os04g51780
Os.27540.2.S1_x_at--731--4551Chr01:7347856..7347880 (25 bp)
GCCCAGACAGTCAGGTTGTTCTAGT
LOC_Os01g13190
Os.27540.2.S1_x_at--658--2351Chr01:7347969..7347993 (25 bp)
AAAGCTCTTGGCCACAGTTTCACTG
LOC_Os01g13190
Os.27540.2.S1_x_at--733--3591Chr01:7348201..7348225 (25 bp)
CATTCTCCAATATGTATGCCCCTGA
LOC_Os01g13190
Os.27540.2.S1_x_at--743--9171Chr01:7348217..7348241 (25 bp)
TGCCCCTGAGCATTTGATCATCAAT
LOC_Os01g13190
Os.27540.2.S1_x_at--1142--4971Chr01:7348370..7348393 (24 bp)
GCAGGGTCGGTCTTCTTGGGACAAT
LOC_Os01g13190
Os.27540.2.S1_x_at--1130--10171Chr01:7348468..7348492 (25 bp)
TATAGCGGCGTGTCACTGAACTCAT
LOC_Os01g13190
Os.27540.2.S1_x_at--652--5471Chr01:7348485..7348509 (25 bp)
GAACTCATTCCTCAAGTACATCACT
LOC_Os01g13190
Os.27540.2.S1_x_at--828--3331Chr01:7348506..7348530 (25 bp)
CACTGTCCAGTCCTTGTCAGAGGAA
LOC_Os01g13190
Os.27540.2.S1_x_at--233--7191Chr01:7348541..7348565 (25 bp)
GTCTGGGTCCGCATGTGGCAAAGAT
LOC_Os01g13190
Os.27540.2.S1_x_at--951--3411Chr01:7348593..7348617 (25 bp)
CAGAAGAGCTGTTACCCTCAGACTT
LOC_Os01g13190
Target Sequence 
GCAAACCCAGTTCATGTTGCTGCTGATTTGTTATCTCAGGCGGAACATGGCCCAGACAGTCAGGTTGTTCTAGTTGTTGC
GGGAGACGGTGTTGATTTGGGTGCTATTGAGGCAGAAGTTAGCAAGCAGTGCTCTGCTCTTCCTAGGGGAGAATTTGCTT
CGAAAGCTCTTGGCCACAGTTTCACTGTTTTTGCGAAAGACATGGTTGAGGCAATTTCATTCTCCAATATGTATGCCCCT
GAGCATTTGATCATCAATGTAAAGGATGCTGAACAGTGGGAGGATCTTGTCGAGAATGCAGGGTCGGTCTTCTTGGGACA
ATGGACCCCGGAGAGCGTGGGCGACTATGCAAGCGGCACAAACCATGTCCTTCCAACCTATGGTTACGCAAGGATGTATA
GCGGCGTGTCACTGAACTCATTCCTCAAGTACATCACTGTCCAGTCCTTGTCAGAGGAAGGGTTGAGAAGTCTGGGTCCG
CATGTGGCAAAGATGGCTGAAGTCGAAGGACTAGAGGCTCACAGAAGAGCTGTTACCCTCAGACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27540.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis