Browse Element(s) Details


Os.27943.1.S1_s_at

Description gb:AY551100.1
DB_XREF= gi:45272583
GEN=PEAMT
TID=Os.27943.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27943 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) phosphoethanolamine N-methyltransferase (PEAMT) mRNA, complete cds.
PROD=phosphoethanolamine N-methyltransferase
FL= gb:AY551100.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5003011/11Phosphoethanolamine N-methyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49970Os.28943.1.S1_x_at2/111+29041155..29044380retrotransposon protein, putative, unclassified
LOC_Os01g49980NANA1+29045003..29050232retrotransposon protein, putative, unclassified
LOC_Os01g49990Os.47130.4.A1_x_at1/111+29050955..29051287retrotransposon protein, putative, unclassified
LOC_Os01g50000Os.56113.1.S1_at10/111+29053436..29054074expressed protein
LOC_Os01g50010Os.41641.1.S1_x_at11/111+29055968..29061904Clathrin assembly protein, putative, expressed
LOC_Os01g50010Os.9037.1.S1_at10/111+29055968..29061904Clathrin assembly protein, putative, expressed
LOC_Os01g50020OsAffx.28355.1.S1_at11/111+29062596..29065070hypothetical protein
LOC_Os01g50020OsAffx.28355.2.S1_at3/111+29062596..29065070hypothetical protein
LOC_Os01g50030Os.27943.1.S1_s_at11/111+29066860..29071609Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os01g50030Os.54115.1.S1_at11/111+29066860..29071609Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os01g50030Os.27943.1.S1_a_at10/111+29066860..29071609Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os01g50040Os.37509.2.S1_x_at11/111+29073422..29078192expressed protein
LOC_Os01g50040Os.37509.1.S1_at11/111+29073422..29078192expressed protein
LOC_Os01g50050Os.33696.1.S1_at11/111+29079014..29082178Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os01g50060Os.41638.1.S1_at10/111+29083276..29086090expressed protein
LOC_Os01g50070NANA1+29095823..29096273multidrug resistance protein 1 homolog, putative

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Gene Ontology Classification
GO idTypeName
GO:0006656biological_processphosphatidylcholine biosynthesis
GO:0005737cellular_componentcytoplasm
GO:0000234molecular_functionphosphoethanolamine N-methyltransferase activity
GO:0008168molecular_functionmethyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27943.1.S1_s_at--1021--2851Chr01:29070722..29070746 (25 bp)
AAGTGCCCTGGGAAACCTTCAGAAG
LOC_Os01g50030
Os.27943.1.S1_s_at--121--3651Chr01:29070738..29070762 (25 bp)
CTTCAGAAGAGTTCGCAGCTTACAT
LOC_Os01g50030
Os.27943.1.S1_s_at--1088--10471Chr01:29070783..29070807 (25 bp)
TTCACGACGTCAGGGCTTACGGACA
LOC_Os01g50030
Os.27943.1.S1_s_at--147--2591Chr01:29071110..29071134 (25 bp)
AACGAGTTCGTCTCTGATTTCAGCC
LOC_Os01g50030
Os.27943.1.S1_s_at--284--8131Chr01:29071228..29071252 (25 bp)
GGACTACGACGCCATTGTGAATGGA
LOC_Os01g50030
Os.27943.1.S1_s_at--119--4751Chr01:29071300..29071324 (25 bp)
GCTGTTCATCGCGACCAAGTGATGA
LOC_Os01g50030
Os.27943.1.S1_s_at--983--2231Chr01:29071359..29071383 (25 bp)
AAATTGGTTTCATGCCGTGTGTCCA
LOC_Os01g50030
Os.27943.1.S1_s_at--1084--591Chr01:29071370..29071394 (25 bp)
ATGCCGTGTGTCCATCATATTACAT
LOC_Os01g50030
Os.27943.1.S1_s_at--437--111Chr01:29071422..29071446 (25 bp)
ATTCGGTGTACTTCTTGTGGAGCTT
LOC_Os01g50030
Os.27943.1.S1_s_at--906--1211Chr01:29071482..29071506 (25 bp)
AGTTCAGCCCGCGTTGTTTTCGACT
LOC_Os01g50030
Os.27943.1.S1_s_at--134--6651Chr01:29071494..29071518 (25 bp)
GTTGTTTTCGACTTCTTGAGCTGGA
LOC_Os01g50030
Target Sequence 
AAGTGCCCTGGGAAACCTTCAGAAGAGTTCGCAGCTTACATTAAGCAAAGGGGTTATGACCTTCACGACGTCAGGGCTTA
CGGACAGATGCTTGAGAATGCTGGTTTCCATNGATGTCATTGNTGAAGACCGCACCGATCAGTTCCTCGATGTTCTAGAG
AGGGANCTNGCTAAAGTTGAAAAGAACAANAACGAGTTCGTCTCTGATTTCAGCCAGGAGGACTACGACGCCATTGTGAA
TGGATGGAAGGCAAAACTTCAAAGGAGNTCTGCTGGTGAGCAGAGGTGGGGGCTGTTCATCGCGACCAAGTGATGAATCA
AGATGCGCAGCGTGGGGGGGACTCGCAAATAAATTGGTTTCATGCCGTGTGTCCATCATATTACATTTTTGTTGTCAAGT
TATTTAATTTCGAATTCGGTGTACTTCTTGTGGAGCTTTTGATGTTGTTGGGACAAAAAACAAAAATAACCAAAGTTCAG
CCCGCGTTGTTTTCGACTTCTTGAGCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27943.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis