Browse Element(s) Details


Os.28062.2.S2_at

Description gb:AK100065.1
DB_XREF= gi:32985274
TID=Os.28062.2
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28062 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 29112 phosphate starvation response regulator-like protein mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013160O05, full insert sequence.
FL= gb:AK103195.1 gb:AK060412.1 gb:AK100065.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2571011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25680Os.53343.1.S1_x_at11/117+14721415..14729559Protein kinase domain containing protein, expressed
LOC_Os07g25680OsAffx.28586.1.S1_at11/117+14721415..14729559Protein kinase domain containing protein, expressed
LOC_Os07g25690Os.16456.1.S1_at11/117+14731541..14733207Al-induced protein, putative, expressed
LOC_Os07g25690OsAffx.5438.1.S1_at8/117+14731541..14733207Al-induced protein, putative, expressed
LOC_Os07g25700OsAffx.16409.1.S1_s_at11/117+14739676..14744172TLD family protein, expressed
LOC_Os07g25700OsAffx.16409.1.S1_at8/117+14739676..14744172TLD family protein, expressed
LOC_Os07g25710Os.28062.1.S1_a_at11/117+14752059..14757679myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os07g25710Os.28062.2.S2_at11/117+14752059..14757679myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os07g25720OsAffx.16410.1.S1_at10/117+14759958..14762813hypothetical protein
LOC_Os07g25720Os.49832.1.S1_at2/117+14759958..14762813hypothetical protein
LOC_Os07g25730Os.17004.1.S1_at8/117+14764615..14765215hypothetical protein
LOC_Os07g25740OsAffx.5439.1.S1_x_at11/117+14772929..14777334KH domain containing protein, expressed
LOC_Os07g25740Os.57022.1.S1_at11/117+14772929..14777334KH domain containing protein, expressed
LOC_Os07g25740OsAffx.5439.1.S1_at11/117+14772929..14777334KH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28062.2.S2_at--354--2951Chr07:14756986..14757010 (25 bp)
AAGGCGGTGGATGCTTCAACCTCAG
LOC_Os07g25710
Os.28062.2.S2_at--391--951Chr07:14757015..14757039 (25 bp)
AGGAACAAAGCCATCTTCTGATCTT
LOC_Os07g25710
Os.28062.2.S2_at--690--9211Chr07:14757039..14757063 (25 bp)
TCCAGAATCTTCTGCCGTGAAGGAT
LOC_Os07g25710
Os.28062.2.S2_at--975--6251Chr07:14757220..14757244 (25 bp)
GATGTGATGAGGGTCTCTCCAAGAT
LOC_Os07g25710
Os.28062.2.S2_at--143--6271Chr07:14757242..14757266 (25 bp)
GATGTGGACCCAAGTGGCCATTGAA
LOC_Os07g25710
Os.28062.2.S2_at--170--5291Chr07:14757264..14757288 (25 bp)
GAATGGGCTCGATGGCTATCTGACT
LOC_Os07g25710
Os.28062.2.S2_at--961--4171Chr07:14757373..14757397 (25 bp)
CCCAGCGCTTGTAGCTAGACTTTAG
LOC_Os07g25710
Os.28062.2.S2_at--333--9731Chr07:14757388..14757412 (25 bp)
TAGACTTTAGTTGTACAGTACCCCA
LOC_Os07g25710
Os.28062.2.S2_at--329--8251Chr07:14757418..14757442 (25 bp)
GGCAGCGACGATTCCGTGTTAATGG
LOC_Os07g25710
Os.28062.2.S2_at--8--3132Chr07:14768146..14768170 (25 bp)
AATTTGCACTGATGTACTCTTTGTC
NONE
Os.28062.2.S2_at--708--3471Chr07:14757501..14757525 (25 bp)
CAGGTGGTTTGACTTCTTGCTTTCT
LOC_Os07g25710
Target Sequence 
AAGGCGGTGGATGCTTCAACCTCAGCAGAAGGAACAAAGCCATCTTCTGATCTTCCAGAATCTTCTGCCGTGAAGGATGT
TCCAGAGAACAGTCAGAACGGAATAGCCAAACAAACAGAATCAGGTGACAGATAATGAGGATGTGATGAGGGTCTCTCCA
AGATGTGGACCCAAGTGGCCATTGAATGGGCTCGATGGCTATCTGACTGATGTTTGGCAAAGCTAAAATTAAATCGTTTT
TGCCTTTTCACGGGGAACAGAACATTGTTGTGAACAGCATATCAAAGCTTGCCCCAGCGCTTGTAGCTAGACTTTAGTTG
TACAGTACCCCAAACACGGCAGCGACGATTCCGTGTTAATGGGATGATCTTTAGGTTTCAGAAGGCAGCACAAGCAAATT
TGCACTGATGTACTCTTTGTCAGGTGGTTTGACTTCTTGCTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28062.2.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis