Browse Element(s) Details


Os.28497.1.S1_at

Description gb:AK111466.1
DB_XREF= gi:32996675
TID=Os.28497.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28497 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0013G02.13 (P0013G02.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-D06, full insert sequence.
FL= gb:AK111466.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3969011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39640OsAffx.21318.2.S1_at11/111+22687743..22689153hypothetical protein
LOC_Os01g39640OsAffx.21318.1.S1_at6/111+22687743..22689153hypothetical protein
LOC_Os01g39650OsAffx.23584.2.S1_at10/111+22692354..22696241Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39650OsAffx.23584.1.S1_x_at9/111+22692354..22696241Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39650OsAffx.23584.1.S1_at7/111+22692354..22696241Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39660Os.20602.2.S1_x_at11/111+22698373..22700553hAT family dimerisation domain containing protein
LOC_Os01g39670OsAffx.9088.1.S1_at11/111+22702422..22704154F-box domain containing protein, expressed
LOC_Os01g39680Os.49309.1.S1_at11/111+22705906..22709710expressed protein
LOC_Os01g39690Os.28497.1.S1_at11/111+22712039..22713458F-box domain containing protein, expressed
LOC_Os01g39700OsAffx.23585.1.S1_at10/111+22718249..22719589hypothetical protein
LOC_Os01g39700OsAffx.766.1.S1_at3/111+22718249..22719589hypothetical protein
LOC_Os01g39700OsAffx.17065.1.A1_at2/111+22718249..22719589hypothetical protein
LOC_Os01g39700Os.6094.1.S1_at1/111+22718249..22719589hypothetical protein
LOC_Os01g39700OsAffx.17065.1.A1_s_at1/111+22718249..22719589hypothetical protein
LOC_Os01g39710Os.52092.1.S1_at10/111+22723971..22724975expressed protein
LOC_Os01g39720OsAffx.16318.1.S1_at2/111+22728256..22731501retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39720OsAffx.16318.1.S1_x_at1/111+22728256..22731501retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39730OsAffx.20387.1.S1_x_at1/111+22731784..22734068transposon protein, putative, unclassified
LOC_Os01g39740OsAffx.7527.1.S1_x_at1/111+22735204..22738256retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28497.1.S1_at--889--7711Chr01:22713061..22713085 (25 bp)
GGTGGCCGCCAAATTCGTGCACGGT
LOC_Os01g39690
Os.28497.1.S1_at--16--1871Chr01:22713111..22713135 (25 bp)
ACGACGCGAACTGGAACTGGTGCTC
LOC_Os01g39690
Os.28497.1.S1_at--239--2971Chr01:22713200..22713224 (25 bp)
AATGGTAGTGGATGCGTCGCCGCCT
LOC_Os01g39690
Os.28497.1.S1_at--6--8931Chr01:22713246..22713270 (25 bp)
TGAGCCTCCGCTGCAAGATTGACAC
LOC_Os01g39690
Os.28497.1.S1_at--724--2811Chr01:22713260..22713284 (25 bp)
AAGATTGACACTGCCGACGGCTCGT
LOC_Os01g39690
Os.28497.1.S1_at--698--9411Chr01:22713281..22713305 (25 bp)
TCGTCCTCCTTGTGCGGCTGTGACA
LOC_Os01g39690
Os.28497.1.S1_at--586--8331Chr01:22713296..22713320 (25 bp)
GGCTGTGACATGTTCCCGTACGTAC
LOC_Os01g39690
Os.28497.1.S1_at--538--4251Chr01:22713340..22713364 (25 bp)
CCGTGCGGACATACCAGGCATGGTG
LOC_Os01g39690
Os.28497.1.S1_at--634--7731Chr01:22713361..22713385 (25 bp)
GGTGTATACCAATGCCTAGAGTGGA
LOC_Os01g39690
Os.28497.1.S1_at--42--3531Chr01:22713394..22713418 (25 bp)
CATGCATGTTTGTACACCAGCGTGT
LOC_Os01g39690
Os.28497.1.S1_at--932--3371Chr01:22713411..22713435 (25 bp)
CAGCGTGTAGGTTCATAAACTTGAC
LOC_Os01g39690
Target Sequence 
GGTGGCCGCCAAATTCGTGCACGGTCGCATCGTCCGGCACATCCACCACCACGACGCGAACTGGAACTGGTGCTCCTCCT
TCAAGCTCATCGGCTTCGACCCGGTCCACGACGACGACGTCTTCTTGTTCGGGGCGACCAATGGTAGTGGATGCGTCGCC
GCCTACTCCCTCACGCTCGGCAAGCTGAGCCTCCGCTGCAAGATTGACACTGCCGACGGCTCGTCCTCCTTGTGCGGCTG
TGACATGTTCCCGTACGTACGCGCGTCCACCACCTCGCCCCGTGCGGACATACCAGGCATGGTGTATACCAATGCCTAGA
GTGGAATATATATCATGCATGTTTGTACACCAGCGTGTAGGTTCATAAACTTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28497.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis