Browse Element(s) Details


Os.30135.1.S1_at

Description gb:AK109220.1
DB_XREF= gi:32994429
TID=Os.30135.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30135 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0026A15.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-E04, full insert sequence.
FL= gb:AK109220.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3696011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36900Os.34669.1.S1_at11/113+20431255..20435189RNA-binding protein, putative, expressed
LOC_Os03g36910Os.36445.1.S1_at11/113+20439573..20442118methyltransferase, FkbM family protein, expressed
LOC_Os03g36920OsAffx.25389.1.S1_at11/113+20442594..20445866NB-ARC domain containing protein, expressed
LOC_Os03g36930Os.57569.1.S1_at6/113+20447050..20451521Eukaryotic initiation factor 4A-3, putative, expressed
LOC_Os03g36944OsAffx.22709.1.S1_x_at11/113+20452370..20454531hypothetical protein
LOC_Os03g36944OsAffx.13203.1.S1_at2/113+20452370..20454531hypothetical protein
LOC_Os03g36960Os.30135.2.S1_x_at11/113+20455957..20456557expressed protein
LOC_Os03g36960Os.30135.1.S1_at11/113+20455957..20456557expressed protein
LOC_Os03g36970OsAffx.22708.5.S1_x_at11/113+20458232..20458825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36970OsAffx.22708.5.S1_at11/113+20458232..20458825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36970OsAffx.22708.2.S1_x_at5/113+20458232..20458825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36970OsAffx.22708.1.S1_x_at2/113+20458232..20458825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36980OsAffx.22708.3.S1_x_at11/113+20462201..20463295retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36980OsAffx.22708.4.S1_x_at7/113+20462201..20463295retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37000OsAffx.22706.1.S1_at11/113+20466138..20468283hypothetical protein
LOC_Os03g37000OsAffx.16865.1.S1_at1/113+20466138..20468283hypothetical protein
LOC_Os03g37000OsAffx.16865.1.S1_x_at1/113+20466138..20468283hypothetical protein
LOC_Os03g37010Os.3318.1.S1_at11/113+20470072..20473869glycosyltransferase, putative, expressed
LOC_Os03g37020NANA3+20474531..20475070hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30135.1.S1_at--848--4151Chr03:20456194..20456218 (25 bp)
CGCCAGGGTCAGGTACCAGCATCTG
LOC_Os03g36960
Os.30135.1.S1_at--20--10591Chr03:20456152..20456176 (25 bp)
TTCTCTTCCTCAATAATACGCATTT
LOC_Os03g36960
Os.30135.1.S1_at--74--9751Chr03:20456139..20456163 (25 bp)
TAATACGCATTTTCGTGCAGGCCAT
LOC_Os03g36960
Os.30135.1.S1_at--244--3591Chr03:20456132..20456156 (25 bp)
CATTTTCGTGCAGGCCATTTGCATC
LOC_Os03g36960
Os.30135.1.S1_at--190--2491Chr03:20456084..20456108 (25 bp)
AACAGAATGTCAGGGTACCTAATGC
LOC_Os03g36960
Os.30135.1.S1_at--762--7671Chr03:20456072..20456096 (25 bp)
GGGTACCTAATGCATGTTCGTCCTG
LOC_Os03g36960
Os.30135.1.S1_at--274--9771Chr03:20456065..20456089 (25 bp)
TAATGCATGTTCGTCCTGCTCTCAT
LOC_Os03g36960
Os.30135.1.S1_at--902--731Chr03:20456059..20456083 (25 bp)
ATGTTCGTCCTGCTCTCATCTTTCG
LOC_Os03g36960
Os.30135.1.S1_at--359--9611Chr03:20456044..20456068 (25 bp)
TCATCTTTCGTCTTCTTTCTTTGAT
LOC_Os03g36960
Os.30135.1.S1_at--650--9531Chr03:20456027..20456051 (25 bp)
TCTTTGATTTTTGTTCAGGGTCAAA
LOC_Os03g36960
Os.30135.1.S1_at--327--10351Chr03:20456020..20456044 (25 bp)
TTTTTGTTCAGGGTCAAAACTGTGT
LOC_Os03g36960
Target Sequence 
CGCCAGGGTCAGGTACCAGCATCTGGGGCAAGATGAGGGCCATTCTCTTCCTCAATAATACGCATTTTCGTGCAGGCCAT
TTGCATCATATCAGATCAGATCTGGAGAAGAACAGAATGTCAGGGTACCTAATGCATGTTCGTCCTGCTCTCATCTTTCG
TCTTCTTTCTTTGATTTTTGTTCAGGGTCAAAACTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30135.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis