Browse Element(s) Details


Os.30296.2.S1_x_at

Description gb:NM_190445.1
DB_XREF= gi:34907973
GEN=P0446G04.19
TID=Os.30296.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.30296 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative ammonium transporter (P0446G04.19), mRNA.
PROD=putative ammonium transporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6151011/11Ammonium transporter 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61490OsAffx.32166.1218.S1_x_at2/111+35895500..35903068retrotransposon protein, putative, unclassified
LOC_Os01g61500Os.20681.1.S1_x_at11/111+35909129..35912547BCL-2 binding anthanogene-1, putative, expressed
LOC_Os01g61500Os.20681.2.A1_at11/111+35909129..35912547BCL-2 binding anthanogene-1, putative, expressed
LOC_Os01g61510Os.30296.1.S1_at11/111+35912999..35915226Ammonium transporter 2, putative, expressed
LOC_Os01g61510Os.30296.2.S1_at11/111+35912999..35915226Ammonium transporter 2, putative, expressed
LOC_Os01g61510Os.30296.2.S1_x_at11/111+35912999..35915226Ammonium transporter 2, putative, expressed
LOC_Os01g61520OsAffx.23884.1.S1_at11/111+35917585..35918016hypothetical protein
LOC_Os01g61530NANA1+35919882..35920307hypothetical protein
LOC_Os01g61540OsAffx.24740.1.S1_at11/111+35921791..35922621hypothetical protein
LOC_Os01g61540OsAffx.24740.1.S1_x_at11/111+35921791..35922621hypothetical protein
LOC_Os01g61540Os.55484.1.S1_x_at2/111+35921791..35922621hypothetical protein
LOC_Os01g61550Os.33005.1.S1_at11/111+35923942..35925867Ammonium transporter 2, putative, expressed
LOC_Os01g61560Os.15134.1.S1_at11/111+35927908..35930841phosphatidate cytidylyltransferase family protein, expressed
LOC_Os01g61570Os.35966.1.S1_at11/111+35932554..35934746GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g61580Os.4905.3.S1_a_at11/111+35936466..35939943SelT-like protein precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0015696biological_processammonium transport
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0008519molecular_functionammonium transporter activity
GO:0015398molecular_functionhigh affinity ammonium transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30296.2.S1_x_at--526--8351Chr01:35913515..35913539 (25 bp)
GGCGGCCATACTGATGGGCATCTGT
LOC_Os01g61510
Os.30296.2.S1_x_at--40--331Chr01:35913508..35913532 (25 bp)
ATACTGATGGGCATCTGTGGCGGCA
LOC_Os01g61510
Os.30296.2.S1_x_at--318--8471Chr01:35913491..35913515 (25 bp)
TGGCGGCAGCTTGCCGTGGTTCTCC
LOC_Os01g61510
Os.30296.2.S1_x_at--51--9191Chr01:35913480..35913504 (25 bp)
TGCCGTGGTTCTCCATGATGATCCT
LOC_Os01g61510
Os.30296.2.S1_x_at--426--6291Chr01:35913464..35913488 (25 bp)
GATGATCCTCCACAAGAGATCGGCG
LOC_Os01g61510
Os.30296.2.S1_x_at--525--1351Chr01:35913450..35913474 (25 bp)
AGAGATCGGCGCTGCTCCAGAAGGT
LOC_Os01g61510
Os.30296.2.S1_x_at--551--4771Chr01:35913440..35913464 (25 bp)
GCTGCTCCAGAAGGTGGACGACACC
LOC_Os01g61510
Os.30296.2.S1_x_at--742--8351Chr01:35913376..35913400 (25 bp)
GGCGGCTTCCTCACGGGCCTGTTCG
LOC_Os01g61510
Os.30296.2.S1_x_at--908--7191Chr01:35913241..35913265 (25 bp)
GTCGTGTGGAACGTCGTGGCCACCA
LOC_Os01g61510
Os.30296.2.S1_x_at--923--1311Chr01:35913099..35913123 (25 bp)
AGAGGTTCGACGTGACGCGCCATGA
LOC_Os01g61510
Os.30296.2.S1_x_at--1041--8091Chr01:35913038..35913062 (25 bp)
GGACGAGGCGATGGATCACCGGCTG
LOC_Os01g61510
Target Sequence 
GGCGGCCATACTGATGGGCATCTGTGGCGGCAGCTTGCCGTGGTTCTCCATGATGATCCTCCACAAGAGATCGGCGCTGC
TCCAGAAGGTGGACGACACCCTCGCCGTCTTCCACACCCACGCCGTCGCGGGCCTCCTCGGCGGCTTCCTCACGGGCCTG
TTCGCCTTGCCGGACCTCACCGCCGTCCACACCCACATCCCTGGCGCGCGCGGCGCGTTCTACGGCGGCGGCATCGCCCA
GGTGGGGAAGCAGATCGCCGGCGCGCTCTTCGTCGTCGTGTGGAACGTCGTGGCCACCACCGTCATCCTGCTCGGCGTCG
GCCTCGTCGTCCCGCTCCGCATGCCCGACGAGCAGCTCAAGATCGGCGACGACGCGGCGCACGGGGAGGAGGCCTACGCG
CTATGGGGAGACGGCGAGAGGTTCGACGTGACGCGCCATGAGGGGGCGAGGGGCGGCGCGTGGGGCGCCGCGGTCGTGGA
CGAGGCGATGGATCACCGGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30296.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis