Browse Element(s) Details


Os.30537.1.S1_at

Description gb:AK108704.1
DB_XREF= gi:32993913
TID=Os.30537.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30537 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative C-4 sterol methyl oxidase (OJ1384D03.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-A02, full insert sequence.
FL= gb:AK108704.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0182011/11Sterol desaturase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01750Os.8372.1.S1_at11/113+449799..455084protein tyrosine phosphatase, putative, expressed
LOC_Os03g01760Os.14607.1.S1_at11/113+457622..460344exostosin family protein, putative, expressed
LOC_Os03g01760Os.14607.1.S1_x_at11/113+457622..460344exostosin family protein, putative, expressed
LOC_Os03g01760Os.14607.2.S1_x_at5/113+457622..460344exostosin family protein, putative, expressed
LOC_Os03g01770Os.24310.1.A1_a_at11/113+461280..463088rhodanese, putative, expressed
LOC_Os03g01780OsAffx.22272.1.S1_at11/113+463616..464817transposon protein, putative, unclassified
LOC_Os03g01790OsAffx.24937.1.S1_at11/113+466834..470785Zinc finger, C3HC4 type family protein
LOC_Os03g01800Os.18421.1.S1_a_at11/113+470997..472438Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g01800Os.46631.1.S1_x_at1/113+470997..472438Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g01810Os.47563.1.A1_at11/113+476111..477906SNF7 family protein, expressed
LOC_Os03g01810Os.30537.2.S1_at6/113+476111..477906SNF7 family protein, expressed
LOC_Os03g01820Os.30537.1.S1_at11/113+478264..480200Sterol desaturase family protein, expressed
LOC_Os03g01830Os.26376.2.S1_at10/113+484267..487525DEAD/DEAH box helicase, putative, expressed
LOC_Os03g01830Os.43898.1.S1_x_at9/113+484267..487525DEAD/DEAH box helicase, putative, expressed
LOC_Os03g01840Os.26376.1.S1_at11/113+487103..488659transposon protein, putative, unclassified, expressed
LOC_Os03g01840OsAffx.24307.1.S1_at10/113+487103..488659transposon protein, putative, unclassified, expressed
LOC_Os03g01850Os.11723.4.S1_x_at11/113+489816..493129Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01850Os.11723.1.S1_s_at11/113+489816..493129Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01850Os.11723.2.S1_s_at8/113+489816..493129Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01860OsAffx.3109.1.S1_at11/113+497147..498140hypothetical protein
LOC_Os03g01870Os.34712.1.S1_at11/113+502353..503623NAC-domain containing protein 21/22, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016126biological_processsterol biosynthesis
GO:0016020cellular_componentmembrane
GO:0000254molecular_functionC-4 methylsterol oxidase activity
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30537.1.S1_at--195--591Chr03:479093..479439 (25 bp)
ATCCACATCCACAGCGGGTTCAAGT
LOC_Os03g01820
Os.30537.1.S1_at--19--10511Chr03:479075..479099 (25 bp)
TTCAAGTTGCCGTTCGATCCGACCA
LOC_Os03g01820
Os.30537.1.S1_at--1111--6191Chr03:479060..479084 (25 bp)
GATCCGACCAAGTATATCCCGTTGT
LOC_Os03g01820
Os.30537.1.S1_at--730--8551Chr03:479026..479050 (25 bp)
TGGAGTACCATGACTACCACCATTT
LOC_Os03g01820
Os.30537.1.S1_at--753--8011Chr03:478997..479021 (25 bp)
GGAGGACACAGCCAGAGCAACTTCT
LOC_Os03g01820
Os.30537.1.S1_at--207--9531Chr03:478975..478999 (25 bp)
TCTCTTCTGTCTTCACTTTCTGTGA
LOC_Os03g01820
Os.30537.1.S1_at--324--7411Chr03:478954..478978 (25 bp)
GTGATTACATCTACGGGACTGACAG
LOC_Os03g01820
Os.30537.1.S1_at--651--10091Chr03:478464..478488 (25 bp)
TAGGCAGGTTGGCTCATGCAGCATC
LOC_Os03g01820
Os.30537.1.S1_at--210--831Chr03:478371..478395 (25 bp)
ATGGAAATTCCCTGTTGTCAATAAC
LOC_Os03g01820
Os.30537.1.S1_at--512--4191Chr03:478330..478354 (25 bp)
CCCTCGCTTATGGAACTATGCTTGA
LOC_Os03g01820
Os.30537.1.S1_at--29--5611Chr03:478288..478312 (25 bp)
GAAATTCCACATGAGTATGACCCAT
LOC_Os03g01820
Target Sequence 
ATCCACATCCACAGCGGGTTCAAGTTGCCGTTCGATCCGACCAAGTATATCCCGTTGTATGGAGGAGTGGAGTACCATGA
CTACCACCATTTCGTGGGAGGACACAGCCAGAGCAACTTCTCTTCTGTCTTCACTTTCTGTGATTACATCTACGGGACTG
ACAGAGGCTACAGATACCATAAGGCAAGCTTGTCAAAGNTGANNNNNNTNGNNNGANNNNANGTTGAGAAAGGAGATGAA
AATGGATTCGGCAACGGGAAACAAGATTAATTAGAGACCAACTGCAATTGTAGGCAGGTTGGCTCATGCAGCATCTGAAG
TTTTCTACACAGCCCTCACACAGGAAAATAATCTGTGTCATGCAGCATATAACCAAACTTTGAATGGAAATTCCCTGTTG
TCAATAACAAGGTTTTCATCATGCCCCTCGCTTATGGAACTATGCTTGATCCTACAATTAAAGATGGAAATTCCACATGA
GTATGACCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30537.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis