Browse Element(s) Details


Os.30537.2.S1_at

Description gb:NM_187657.1
DB_XREF= gi:34902399
GEN=OJ1384D03.11
TID=Os.30537.2
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.30537 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Unknown protein (OJ1384D03.11), mRNA.
PROD=Unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g018106/11SNF7 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01750Os.8372.1.S1_at11/113+449799..455084protein tyrosine phosphatase, putative, expressed
LOC_Os03g01760Os.14607.1.S1_at11/113+457622..460344exostosin family protein, putative, expressed
LOC_Os03g01760Os.14607.1.S1_x_at11/113+457622..460344exostosin family protein, putative, expressed
LOC_Os03g01760Os.14607.2.S1_x_at5/113+457622..460344exostosin family protein, putative, expressed
LOC_Os03g01770Os.24310.1.A1_a_at11/113+461280..463088rhodanese, putative, expressed
LOC_Os03g01780OsAffx.22272.1.S1_at11/113+463616..464817transposon protein, putative, unclassified
LOC_Os03g01790OsAffx.24937.1.S1_at11/113+466834..470785Zinc finger, C3HC4 type family protein
LOC_Os03g01800Os.18421.1.S1_a_at11/113+470997..472438Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g01800Os.46631.1.S1_x_at1/113+470997..472438Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g01810Os.47563.1.A1_at11/113+476111..477906SNF7 family protein, expressed
LOC_Os03g01810Os.30537.2.S1_at6/113+476111..477906SNF7 family protein, expressed
LOC_Os03g01820Os.30537.1.S1_at11/113+478264..480200Sterol desaturase family protein, expressed
LOC_Os03g01830Os.26376.2.S1_at10/113+484267..487525DEAD/DEAH box helicase, putative, expressed
LOC_Os03g01830Os.43898.1.S1_x_at9/113+484267..487525DEAD/DEAH box helicase, putative, expressed
LOC_Os03g01840Os.26376.1.S1_at11/113+487103..488659transposon protein, putative, unclassified, expressed
LOC_Os03g01840OsAffx.24307.1.S1_at10/113+487103..488659transposon protein, putative, unclassified, expressed
LOC_Os03g01850Os.11723.4.S1_x_at11/113+489816..493129Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01850Os.11723.1.S1_s_at11/113+489816..493129Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01850Os.11723.2.S1_s_at8/113+489816..493129Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01860OsAffx.3109.1.S1_at11/113+497147..498140hypothetical protein
LOC_Os03g01870Os.34712.1.S1_at11/113+502353..503623NAC-domain containing protein 21/22, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30537.2.S1_at--1021--6031Chr03:476625..477103 (25 bp)
GAGATCGTAGCTACTGCCAGGACTG
LOC_Os03g01810
Os.30537.2.S1_at--1078--4411Chr03:477094..477118 (25 bp)
GCCAGGACTGTTGGCCATTTATCCA
LOC_Os03g01810
Os.30537.2.S1_at--787--8431Chr03:477106..477130 (25 bp)
GGCCATTTATCCAAGAGTACTGAGG
LOC_Os03g01810
Os.30537.2.S1_at--407--6291Chr03:477132..477156 (25 bp)
GATGAAACTTGTCAATAACCTTATG
LOC_Os03g01810
Os.30537.2.S1_at--163--5571Chr03:477156..477180 (25 bp)
GAAAGCACCAGAGGTGGCTGCCACC
LOC_Os03g01810
Os.30537.2.S1_at--957--8311Chr03:477171..477195 (25 bp)
GGCTGCCACCATGCAGGAATTCAGC
LOC_Os03g01810
Os.30537.2.S1_at--867--451Chr03:478082..478106 (25 bp)
ATCTCCTTAAGAATGTTGCAACAAC
NONE
Os.30537.2.S1_at--175--9031Chr03:478098..478122 (25 bp)
TGCAACAACCCACCATGAAGCATTG
NONE
Os.30537.2.S1_at--267--5211Chr03:478145..478169 (25 bp)
GAATTGTTTACTGCTAGTGTTTGCT
NONE
Os.30537.2.S1_at--834--6451Chr03:478328..478352 (25 bp)
GATCAAGCATAGTTCCATAAGCGAG
NONE
Os.30537.2.S1_at--67--5531Chr03:478362..478386 (25 bp)
GAAAACCTTGTTATTGACAACAGGG
NONE
Target Sequence 
GAGATCGTAGCTACTGCCAGGACTGTTGGCCATTTATCCAAGAGTACTGAGGTGATGAAACTTGTCAATAACCTTATGAA
AGCACCAGAGGTGGCTGCCACCATGCAGGAATTCAGCAAAGAGATGACCAAGGCTGGTGTAATGGAAGAAATGGTGAACG
ATGCTGTGGATTCAGCGCTGGACAATGAGGACATTGAGGAGGAGATTGNAGAGGAGGNTGACNNAGGNCNTCTCTGNAAN
TNGCTGGGGAGANTGNCTCTGAGCTTCCAGACGCTGTCAGGAAGGAAAAGGAGAAGATGAAGCAACCTTCAACAAGTGAA
CCTGCAGAGAGAACTGCTATTGCGGAAGCCGTCGATGACGATGACGATGACGAGCTTGAACAGATAAGGGAAAGGCTCGC
CAAAATCTCCTTAAGAATGTTGCAACAACCCACCATGAAGCATTGGCAAGTATTTATTTTATTTTTTGAATTGTTTACTG
CTAGTGTTTGCTTTGGCAAGAGGATCAAGCATAGTTCCATAAGCGAGGGGCATGATGAAAACCTTGTTATTGACAACAGG
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30537.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis