Browse Element(s) Details


Os.31858.2.S1_x_at

Description gb:AK106627.1
DB_XREF= gi:32991836
TID=Os.31858.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31858 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1058_A12.29 (OJ1058_A12.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-C09, full insert sequence.
FL= gb:AK106627.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3534010/11Protein kinase domain containing protein, expressed
LOC_Os07g354101/11Protein kinase domain containing protein, expressed
LOC_Os07g355401/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35290Os.26323.1.S1_at11/117+21119632..21123563Protein kinase domain containing protein, expressed
LOC_Os07g35290Os.40420.1.S1_x_at4/117+21119632..21123563Protein kinase domain containing protein, expressed
LOC_Os07g35300Os.40420.1.S1_x_at11/117+21126918..21130816serine/threonine kinase, putative, expressed
LOC_Os07g35300Os.26323.1.S1_at1/117+21126918..21130816serine/threonine kinase, putative, expressed
LOC_Os07g35310Os.49818.1.S1_s_at5/117+21131765..21133318Serine/threonine-protein kinase receptor precursor, putative
LOC_Os07g35320NANA7+21137419..21138921serine/threonine kinase, putative
LOC_Os07g35330Os.26914.1.S1_at11/117+21139268..21142585receptor-like protein kinase homolog RK20-1, putative, expressed
LOC_Os07g35340Os.31858.3.S1_x_at11/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35340Os.31858.2.S1_at11/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35340Os.31858.2.S1_x_at10/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35340Os.31858.1.S1_at10/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35340OsAffx.5535.1.S1_x_at1/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35350Os.25578.1.S1_at11/117+21148322..21150633Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35350Os.57525.1.S1_x_at10/117+21148322..21150633Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35360OsAffx.16565.1.S1_at11/117+21152391..21152960hypothetical protein
LOC_Os07g35370Os.15426.1.S1_at11/117+21153702..21157102Protein kinase domain containing protein, expressed
LOC_Os07g35380Os.31858.2.S1_at1/117+21159451..21162153Protein kinase domain containing protein, expressed
LOC_Os07g35390Os.19584.1.A1_at11/117+21165567..21168984Protein kinase domain containing protein, expressed
LOC_Os07g35390Os.48695.1.S1_x_at1/117+21165567..21168984Protein kinase domain containing protein, expressed
LOC_Os07g35400NANA7+21170504..21170956hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31858.2.S1_x_at--826--8231Chr07:21146220..21146244 (25 bp)
GGCAACGGATAACTTCTCGGACAAT
LOC_Os07g35340
Os.31858.2.S1_x_at--392--7653Chr07:21266061..21266085 (25 bp)
GGGAGTACTCTCAGATGGACAAGAA
LOC_Os07g35540
Os.31858.2.S1_x_at--871--7751Chr07:21146464..21146488 (25 bp)
GGTGTTGTTATTGGCAGAGCTTCAA
LOC_Os07g35340
Os.31858.2.S1_x_at--1079--1551Chr07:21146505..21146529 (25 bp)
AGCTACAAGGGTTTTGCTTGCATCA
LOC_Os07g35340
Os.31858.2.S1_x_at--111--2391Chr07:21146945..21146969 (25 bp)
AAACTGGGAGCAACTGTACAACATC
LOC_Os07g35340
Os.31858.2.S1_x_at--439--5571Chr07:21147041..21147065 (25 bp)
GAAATCAAACAACATCCTACTTGGG
LOC_Os07g35340
Os.31858.2.S1_x_at--400--8431NONE
GGCCATACTAATACTCGGACAACTA
NONE
Os.31858.2.S1_x_at--555--8171Chr07:21147153..21147177 (25 bp)
GGAACATTGTAAGCTCATGTGCATA
LOC_Os07g35340
Os.31858.2.S1_x_at--821--3071Chr07:21147177..21147201 (25 bp)
AATAAAACCTTCACTCATAGAGATA
LOC_Os07g35340
Os.31858.2.S1_x_at--176--7351Chr07:21147208..21147232 (25 bp)
GTGCAAGCCTAATGCTTATCCTCTG
LOC_Os07g35340
Os.31858.2.S1_x_at--314--10411Chr07:21147223..21147247 (25 bp)
TTATCCTCTGCAGCGGTTATATGGC
LOC_Os07g35340
Target Sequence 
GGCAACGGATAACTTCTCGGACAATAATAAGCTCGGAGAAGGTGGTTATGGTATTGTATACAAGGGAGTACTCTCAGATG
GACAAGAAGTAGCAGTGAAGAAACTTTTGGGAACAAGTGAGCATGGATTGGATCAGCTACAAAATGAGGTGTTGTTATTG
GCAGAGCTTCAACACAAGAACCTTGTTAAGCTACAAGGGTTTTGCTTGCATCAGGGGGAAACACTGCTTGTTTATGAATA
CGTCAAGAACGGGAGCCTGGATAACTTTCTATTCGATACCAGTAGGGGAAACACACCAAACTGGGAGCAACTGTACAACA
TCATTTTTGGAATTGCCAAGGGAATATTGTATCTTCACGAGGACTCAAGCTTGAGGATCATTCACCGAGACCTGAAATCA
AACAACATCCTACTTGGGGAGGACATGGAACCAAAAATTGCAGATTTTGGATTGGCAAGGCTACTAGAAGAAGGCCATAC
TAATACTCGGACAACTAGAATTGTTGGAACATTGTAAGCTCATGTGCATAATAAAACCTTCACTCATAGAGATATTGAAT
GTGCAAGCCTAATGCTTATCCTCTGCAGCGGTTATATGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31858.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis