Browse Element(s) Details


Os.3192.2.S1_x_at

Description gb:NM_196383.1
DB_XREF= gi:37534125
TID=Os.3192.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.3192 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative Mic1 homolog (OSJNBa0050N08.24), mRNA.
PROD=putative Mic1 homolog
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2614011/11Colon cancer-associated protein Mic1-like containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26100OsAffx.18403.1.S1_at11/1110+13189495..13189851hypothetical protein
LOC_Os10g26110OsAffx.18404.1.S1_at11/1110+13192710..13194496Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed
LOC_Os10g26130Os.26480.1.A1_at11/1110+13206117..13211006phenylalanyl-tRNA synthetase alpha chain, putative, expressed
LOC_Os10g26130Os.26480.1.A1_s_at11/1110+13206117..13211006phenylalanyl-tRNA synthetase alpha chain, putative, expressed
LOC_Os10g26130Os.3191.2.S1_s_at11/1110+13206117..13211006phenylalanyl-tRNA synthetase alpha chain, putative, expressed
LOC_Os10g26140Os.3192.1.S1_at11/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26140Os.3192.2.S1_x_at11/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26140Os.3192.1.S1_a_at11/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26140Os.57053.1.S1_at1/1110+13212012..13220792Colon cancer-associated protein Mic1-like containing protein, expressed
LOC_Os10g26150OsAffx.30538.1.S1_x_at11/1110+13221465..13221932expressed protein
LOC_Os10g26150Os.50366.1.S1_x_at10/1110+13221465..13221932expressed protein
LOC_Os10g26164OsAffx.20365.2.S1_at11/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26164OsAffx.20365.1.S1_s_at11/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26164OsAffx.20365.3.S1_at11/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26164OsAffx.20365.1.S1_at9/1110+13226352..13230676endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g26180OsAffx.30539.1.S1_at10/1110+13231460..13232261hypothetical protein
LOC_Os10g26190OsAffx.20364.1.S1_at11/1110+13232860..13233219hypothetical protein
LOC_Os10g26200OsAffx.31867.1.S1_x_at1/1110+13235254..13236099hypothetical protein
LOC_Os10g26210OsAffx.22699.1.S1_x_at2/1110+13244857..13249378retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3192.2.S1_x_at--582--2291Chr10:13218380..13218404 (25 bp)
AAATGATGGCTGATCCTGCGTATCT
LOC_Os10g26140
Os.3192.2.S1_x_at--804--1371Chr10:13218818..13218842 (25 bp)
AGAGCTGGGTTGAAGGCTCCTCCTA
LOC_Os10g26140
Os.3192.2.S1_x_at--719--4771Chr10:13218833..13218857 (25 bp)
GCTCCTCCTAACCTTTTTGTGATGA
LOC_Os10g26140
Os.3192.2.S1_x_at--262--8871Chr10:13218852..13218876 (25 bp)
TGATGATGACAACACTGCTGGCCCG
LOC_Os10g26140
Os.3192.2.S1_x_at--729--5151Chr10:13218879..13218903 (25 bp)
GCAACCGTTATCCTGAAATAGCCTT
LOC_Os10g26140
Os.3192.2.S1_x_at--615--5211Chr10:13219627..13219651 (25 bp)
GAATTAGGTCAACAACACTCTCCGA
LOC_Os10g26140
Os.3192.2.S1_x_at--170--8931Chr10:13219698..13219722 (25 bp)
TGACTACGTCACTGCGTTACTGCAA
LOC_Os10g26140
Os.3192.2.S1_x_at--1072--1391Chr10:13219722..13219746 (25 bp)
AGACGGATACCACCTGGAGGCTCTT
LOC_Os10g26140
Os.3192.2.S1_x_at--300--6211Chr10:13219738..13219762 (25 bp)
GAGGCTCTTCGCTACGCTAGAAAAT
LOC_Os10g26140
Os.3192.2.S1_x_at--737--7071Chr10:13220118..13220142 (25 bp)
GTAATAACTGTGCAGCCTGTCCTGT
LOC_Os10g26140
Os.3192.2.S1_x_at--60--8671Chr10:13220156..13220180 (25 bp)
TGTGGCCATAAACAGCGCGCAGAAC
LOC_Os10g26140
Target Sequence 
AAATGATGGCTGATCCTGCGTATCTTATTTCTATCATCATGGAGTTTCTACGAAGTGTCTCAAGAGCTGGGTTGAAGGCT
CCTCCTAACCTTTTTGTGATGATGACAACACTGCTGGCCCGCAGCAACCGTTATCCTGAAATAGCCTTGTTTGTATCCAA
CAAGATCCTAGAACCCTCCAAGGAACTTGCGATGCAACTCATGGAATTAGGTCAACAACACTCTCCGACAAGGAAGCTGG
GCGTGGACATGCTGAGAGAGCGGGGCTTGCACCATGACTACGTCACTGCGTTACTGCAAGACGGATACCACCTGGAGGCT
CTTCGCTACGCTAGAAAATACAAGGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACAGCGC
GCAGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3192.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis