Browse Element(s) Details


Os.32501.1.S1_a_at

Description gb:AK074009.1
DB_XREF= gi:32984032
TID=Os.32501.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32501 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0001O14.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033076H20, full insert sequence.
FL= gb:AK074009.1 gb:AK104025.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3986011/11rhodanese, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39800Os.46632.1.S1_at11/1110+20972324..20975976hypothetical protein
LOC_Os10g39810Os.3082.1.S1_at10/1110+20978768..20981722Sterol desaturase family protein, expressed
LOC_Os10g39820Os.3085.1.S1_at11/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39820Os.47632.1.S1_s_at11/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39820Os.15864.1.S1_s_at1/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39830OsAffx.18584.1.S1_at10/1110+20986666..20989668expressed protein
LOC_Os10g39840Os.46631.1.S1_x_at10/1110+20990504..20992314Glycosyl hydrolases family 16 protein, expressed
LOC_Os10g39840OsAffx.16482.1.S1_x_at1/1110+20990504..20992314Glycosyl hydrolases family 16 protein, expressed
LOC_Os10g39850Os.23245.1.A1_at10/1110+20993103..20997685Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g39860Os.32501.1.S1_a_at11/1110+20998536..21000958rhodanese, putative, expressed
LOC_Os10g39870Os.46896.1.S1_at10/1110+21001807..21002970cytochrome c biogenesis protein CcmE family, putative, expressed
LOC_Os10g39880Os.46404.1.S1_x_at7/1110+21004969..21006142Photosystem Q, putative
LOC_Os10g39890OsAffx.20155.1.S1_at10/1110+21008624..21009742Pollen proteins Ole e I family protein
LOC_Os10g39900Os.22919.1.S1_at11/1110+21011214..21018389expressed protein
LOC_Os10g39910Os.26378.1.A1_at11/1110+21020287..21029467expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004725molecular_functionprotein tyrosine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32501.1.S1_a_at--71--991Chr10:20998884..20998908 (25 bp)
AGGAGAGGAGCTACCAGGCGCACAT
LOC_Os10g39860
Os.32501.1.S1_a_at--477--9151Chr10:21000410..21000434 (25 bp)
TGCGAGGTCCATCGTGTGCCAAGAT
LOC_Os10g39860
Os.32501.1.S1_a_at--104--6291Chr10:21000432..21000456 (25 bp)
GATGTTCTCCGACTATCTATCTGAG
LOC_Os10g39860
Os.32501.1.S1_a_at--999--3551Chr10:21000483..21000507 (25 bp)
CATCATGGTGCTGGAACGTGGGTTC
LOC_Os10g39860
Os.32501.1.S1_a_at--209--8751Chr10:21000593..21000617 (25 bp)
TGTAACTCTACTCGCTTCCTGAATG
LOC_Os10g39860
Os.32501.1.S1_a_at--394--731Chr10:21000625..21000649 (25 bp)
ATGTTGGCAGTCGATCTCCAATGCT
LOC_Os10g39860
Os.32501.1.S1_a_at--540--9091Chr10:21000646..21000670 (25 bp)
TGCTGAATTTGGTCTATTTTGCCTC
LOC_Os10g39860
Os.32501.1.S1_a_at--892--3511Chr10:21000670..21000694 (25 bp)
CATGAGATCATTCGTCACAGTGTAT
LOC_Os10g39860
Os.32501.1.S1_a_at--470--10011Chr10:21000734..21000758 (25 bp)
TAGCATAAGTTAACTACCCCACTGT
LOC_Os10g39860
Os.32501.1.S1_a_at--857--1951Chr10:21000754..21000778 (25 bp)
ACTGTAGTGTCAGGCACACCACGGG
LOC_Os10g39860
Os.32501.1.S1_a_at--1048--2411Chr10:21000803..21000827 (25 bp)
AAAACTCTTTACATCTTGGCTGAAG
LOC_Os10g39860
Target Sequence 
AGGAGAGGAGCTACCAGGCGCACATCGGGGGGTCGCACCACTTCTCCAGCCGCAGCTTCGCGGCGCGGCTGCCGGAGCTC
GCGCGTGCCACCGGCGACAAGGACACCGTCGTCTTCCACTGCGCCCTCAGCAAGGTGCGAGGTCCATCGTGTGCCAAGAT
GTTCTCCGACTATCTATCTGAGACCAAGGAAGAATCAGGAACAAAGAACATCATGGTGCTGGAACGTGGGTTCAATGGAT
GGGAGCTTTCGGGACAACCCGTTTGCCGGTGCACTGATGCCCCTTGCAAAGGCACATGCTCACCTGAAGAACCTGAGTTG
TAACTCTACTCGCTTCCTGAATGATCAGCAATGTTGGCAGTCGATCTCCAATGCTGAATTTGGTCTATTTTGCCTCATGA
GATCATTCGTCACAGTGTATTGGACTGAAATGCCACTTTGTGGACAATTTCATCAGATATAGCATAAGTTAACTACCCCA
CTGTAGTGTCAGGCACACCACGGGGTACTGAATTATTACTGATTACTAAAAACTCTTTACATCTTGGCTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32501.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis