Browse Element(s) Details


Os.32532.1.S1_at

Description gb:AK103817.1
DB_XREF= gi:32989026
TID=Os.32532.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32532 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033147E22, full insert sequence.
FL= gb:AK103817.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g163709/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16340Os.38263.2.S1_x_at10/111+9261793..9265267expressed protein
LOC_Os01g16340Os.38263.1.S1_at10/111+9261793..9265267expressed protein
LOC_Os01g16350Os.72.1.S1_s_at11/111+9265469..9269716Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor, putative, expressed
LOC_Os01g16350Os.72.1.S1_at11/111+9265469..9269716Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor, putative, expressed
LOC_Os01g16350Os.72.1.S1_x_at11/111+9265469..9269716Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor, putative, expressed
LOC_Os01g16360OsAffx.23273.1.S1_x_at11/111+9285642..9285884hypothetical protein
LOC_Os01g16370Os.32532.2.S1_x_at11/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.32532.1.S1_at9/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.46481.2.S1_x_at1/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.52782.1.S1_at1/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16370Os.52574.2.S1_x_at1/111+9289995..9296489NB-ARC domain containing protein, expressed
LOC_Os01g16380OsAffx.11078.1.S1_s_at11/111+9298916..9300895hypothetical protein
LOC_Os01g16380OsAffx.11078.1.S1_at9/111+9298916..9300895hypothetical protein
LOC_Os01g16380OsAffx.23273.1.S1_x_at1/111+9298916..9300895hypothetical protein
LOC_Os01g16390OsAffx.23273.1.S1_x_at2/111+9302886..9306623NB-ARC domain containing protein
LOC_Os01g16400Os.43707.1.S1_at11/111+9310937..9314838NB-ARC domain containing protein, expressed
LOC_Os01g16400OsAffx.23273.1.S1_x_at2/111+9310937..9314838NB-ARC domain containing protein, expressed
LOC_Os01g16400Os.49478.1.S1_at1/111+9310937..9314838NB-ARC domain containing protein, expressed
LOC_Os01g16400OsAffx.11078.1.S1_s_at1/111+9310937..9314838NB-ARC domain containing protein, expressed
LOC_Os01g16414Os.37639.1.S1_at11/111+9315793..9320117Actin family protein, expressed
LOC_Os01g16414Os.37639.1.S1_a_at11/111+9315793..9320117Actin family protein, expressed
LOC_Os01g16414Os.37639.2.S1_x_at10/111+9315793..9320117Actin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32532.1.S1_at--147--4311NONE
CCTTACTACAGCATGAGCCAGGAAT
NONE
Os.32532.1.S1_at--808--9851NONE
TACAGCATGAGCCAGGAATACATTC
NONE
Os.32532.1.S1_at--756--5231Chr01:9296139..9296163 (25 bp)
GAATACATTCAATCTCCTGCTAGGC
LOC_Os01g16370
Os.32532.1.S1_at--491--3051Chr01:9296149..9296173 (25 bp)
AATCTCCTGCTAGGCAGGCGGTTCA
LOC_Os01g16370
Os.32532.1.S1_at--181--4671Chr01:9296166..9296190 (25 bp)
GCGGTTCAGGGCCAACGACTAAGTA
LOC_Os01g16370
Os.32532.1.S1_at--848--9751Chr01:9296192..9296216 (25 bp)
TAATGCCAAGGAATCTACCGTAGTG
LOC_Os01g16370
Os.32532.1.S1_at--1149--5231Chr01:9296202..9296226 (25 bp)
GAATCTACCGTAGTGACTAGCAAGG
LOC_Os01g16370
Os.32532.1.S1_at--1103--2011Chr01:9296217..9296241 (25 bp)
ACTAGCAAGGAGGATGGACGGTCAT
LOC_Os01g16370
Os.32532.1.S1_at--254--1911Chr01:9296234..9296258 (25 bp)
ACGGTCATTGGTGAATGGCCTGCCC
LOC_Os01g16370
Os.32532.1.S1_at--21--8471Chr01:9296249..9296273 (25 bp)
TGGCCTGCCCCGAAATTCTAGAGAA
LOC_Os01g16370
Os.32532.1.S1_at--808--2235Chr11:322414..322682 (25 bp)
AAATTACTTCAACTAGCATGGTGGC
NONE
Target Sequence 
CCTTACTACAGCATGAGCCAGGAATACATTCAATCTCCTGCTAGGCAGGCGGTTCAGGGCCAACGACTAAGTAATAATGC
CAAGGAATCTACCGTAGTGACTAGCAAGGAGGATGGACGGTCATTGGTGAATGGCCTGCCCCGAAATTCTAGAGAAATTA
CTTCAACTAGCATGGTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32532.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis