Browse Element(s) Details


Os.32965.1.S1_at

Description gb:AK102235.1
DB_XREF= gi:32987444
TID=Os.32965.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32965 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033088B21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033088B21, full insert sequence.
FL= gb:AK102235.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3573011/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35650Os.53707.1.S1_x_at1/115+21088676..21103104POT family protein, expressed
LOC_Os05g35660OsAffx.27975.1.S1_at10/115+21103583..21104337hypothetical protein
LOC_Os05g35670OsAffx.4533.1.S1_at10/115+21107614..21108377oligopeptide transporter, putative
LOC_Os05g35680OsAffx.27182.1.S1_at11/115+21111539..21112761hypothetical protein
LOC_Os05g35690Os.17900.1.S1_s_at11/115+21114928..21115803Gibberellin-regulated protein 2 precursor, putative, expressed
LOC_Os05g35700NANA5+21116650..21117224hypothetical protein
LOC_Os05g35710Os.8839.1.S1_at11/115+21118679..21121719expressed protein
LOC_Os05g35710Os.8839.2.S1_at11/115+21118679..21121719expressed protein
LOC_Os05g35710Os.8839.2.S1_x_at11/115+21118679..21121719expressed protein
LOC_Os05g35720Os.18304.1.S1_at9/115+21122681..21124515TMEM18 protein, putative, expressed
LOC_Os05g35730Os.32965.1.S1_at11/115+21124736..21131244hydrolase, alpha/beta fold family protein, expressed
LOC_Os05g35740Os.9669.1.S1_at11/115+21131630..21133724Pi starvation-induced protein, putative, expressed
LOC_Os05g35750Os.35344.18.S1_x_at10/115+21135933..21138775hypothetical protein
LOC_Os05g35750Os.35344.3.S1_x_at9/115+21135933..21138775hypothetical protein
LOC_Os05g35750OsAffx.22940.5.S1_at7/115+21135933..21138775hypothetical protein
LOC_Os05g35750OsAffx.22940.5.S1_x_at5/115+21135933..21138775hypothetical protein
LOC_Os05g35760OsAffx.27184.1.S1_at11/115+21141660..21143541Serine/threonine-protein kinase SAPK7, putative
LOC_Os05g35760Os.44554.1.A1_at1/115+21141660..21143541Serine/threonine-protein kinase SAPK7, putative
LOC_Os05g35760Os.56292.1.S1_x_at1/115+21141660..21143541Serine/threonine-protein kinase SAPK7, putative
LOC_Os05g35770OsAffx.27185.1.S1_at11/115+21146238..21147844Serine/threonine-protein kinase SAPK9, putative
LOC_Os05g35780NANA5+21149277..21149765hypothetical protein
LOC_Os05g35789NANA5+21151067..21151303NA

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0003824molecular_functioncatalytic activity
GO:0008487molecular_functionprenyl-dependent CAAX protease activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32965.1.S1_at--564--7371Chr05:21125265..21125289 (25 bp)
GTGACTCAGATAATCCTATTTCCAA
LOC_Os05g35730
Os.32965.1.S1_at--391--2211Chr05:21125153..21125177 (25 bp)
ACAAGAGAATGTGACGCCAGCCCAA
LOC_Os05g35730
Os.32965.1.S1_at--870--4411Chr05:21125138..21125162 (25 bp)
GCCAGCCCAAGGTCCTGTAGGATCA
LOC_Os05g35730
Os.32965.1.S1_at--392--4871Chr05:21125074..21125098 (25 bp)
GCTATTGCTCCTGTAAAGATATCCA
LOC_Os05g35730
Os.32965.1.S1_at--26--10511Chr05:21125049..21125073 (25 bp)
TTAATCAGCTCATTCGATCGCAGGG
LOC_Os05g35730
Os.32965.1.S1_at--1113--6031Chr05:21125024..21125048 (25 bp)
GAGATCTGTTTGGTTGCTTACTTAC
LOC_Os05g35730
Os.32965.1.S1_at--830--10351Chr05:21124994..21125018 (25 bp)
TTTTGTAACATCTTGGCCTTTCCTT
LOC_Os05g35730
Os.32965.1.S1_at--776--7271Chr05:21124968..21124992 (25 bp)
GTGCCCTGGGTTTTATCTTGTTTAG
LOC_Os05g35730
Os.32965.1.S1_at--1083--10551Chr05:21124928..21124952 (25 bp)
TTCTTTGCCTGCTAAACGGTTATGA
LOC_Os05g35730
Os.32965.1.S1_at--93--6751Chr05:21124829..21124853 (25 bp)
GTTCATATTTGTGTATCAGTTCCTA
LOC_Os05g35730
Os.32965.1.S1_at--927--9011Chr05:21124770..21124794 (25 bp)
TGCAATGATTCAATTCCTCTGTAAT
LOC_Os05g35730
Target Sequence 
GTGACTCAGATAATCCTATTTCCAATGAAATGGAACTCCGCAATGGCATNGGTTGGTGTGCAACAGGATGGAATCGCCAC
AGAAATACAGAATGAGTGTGACGGTAATAGGTCACAAGAGAATGTGACGCCAGCCCAAGGTCCTGTAGGATCACAGGAAC
AGCCAAAACAAAACATAGATAAAATCCNAGGATGCTATTGCTCCTGTAAAGATATCCATTAATCAGCTCATTCGATCGCA
GGGGAGATCTGTTTGGTTGCTTACTTACATTGCTTTTGTAACATCTTGGCCTTTCCTTGGTGCCCTGGGTTTTATCTTGT
TTAGGAAAAAGTTCAGGANTTCTTTGCCTGCTAAACGGTTATGAAACTAAGGCAATTATGCTTACAGTACATACACATAA
TTGTTTCACGTGTAGTATGTAAAATGCTGGCAACAACAGTTCATATTTGTGTATCAGTTCCTAAGAAAATAAATTATATA
GGTGTAACATGCTGTCATGCAATGATTCAATTCCTCTGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis