Browse Element(s) Details


Os.33176.1.S1_at

Description gb:AK066726.1
DB_XREF= gi:32976744
TID=Os.33176.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33176 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative adapter protein ATH-55 (OJ1003_C06.36), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074K22, full insert sequence.
FL= gb:AK101483.1 gb:AK066726.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4497011/11transcription-coupled DNA repair protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44900Os.22197.1.S1_at1/117+26791757..26792797serine hydrolase, putative, expressed
LOC_Os07g44910Os.29933.1.S1_at11/117+26794498..26795817PrMC3, putative, expressed
LOC_Os07g44920Os.43269.1.S1_x_at3/117+26800833..26801431Dirigent-like protein
LOC_Os07g44930Os.43269.1.S1_x_at1/117+26803569..26804441Dirigent-like protein, expressed
LOC_Os07g44940Os.36008.2.S1_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.2.S1_x_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.3.S1_x_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.1.S1_at11/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44940Os.36008.3.S1_at10/117+26804729..26807353ATP12 ATPase family protein, expressed
LOC_Os07g44950Os.16597.1.S1_s_at11/117+26808105..26811557bZIP transcription factor family protein, expressed
LOC_Os07g44960Os.8486.1.S2_s_at11/117+26814353..26817493nodulation protein, putative, expressed
LOC_Os07g44960Os.8486.1.S1_a_at11/117+26814353..26817493nodulation protein, putative, expressed
LOC_Os07g44960Os.8486.1.S1_at11/117+26814353..26817493nodulation protein, putative, expressed
LOC_Os07g44970OsAffx.30782.1.S1_s_at11/117+26817670..26822563transcription-coupled DNA repair protein, putative, expressed
LOC_Os07g44970Os.33176.1.S1_at11/117+26817670..26822563transcription-coupled DNA repair protein, putative, expressed
LOC_Os07g44980Os.38395.3.S1_x_at3/117+26829351..26832167hypothetical protein
LOC_Os07g44980Os.38395.5.S1_at2/117+26829351..26832167hypothetical protein
LOC_Os07g44980Os.38395.2.S1_x_at2/117+26829351..26832167hypothetical protein
LOC_Os07g44990Os.2987.3.S1_x_at2/117+26836213..26838611retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g45000Os.27701.1.A1_at9/117+26843026..26848619Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0005622cellular_componentintracellular
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33176.1.S1_at--725--4771Chr07:26818148..26818172 (25 bp)
GCTGCTGCTACTAACAATGAGGACA
LOC_Os07g44970
Os.33176.1.S1_at--887--951Chr07:26818129..26818153 (25 bp)
AGGACATTGAGCTGCCCGATGAGAG
LOC_Os07g44970
Os.33176.1.S1_at--852--4332Chr11:777790..777814 (25 bp)
CCAAATTGCGGAGAAGAGTGTTCCC
NONE
Os.33176.1.S1_at--887--10692Chr11:777795..777819 (25 bp)
TTGCGGAGAAGAGTGTTCCCGCTGC
NONE
Os.33176.1.S1_at--404--6113Chr11:777805..777829 (25 bp)
GAGTGTTCCCGCTGCGGTGTTTGGA
NONE
Os.33176.1.S1_at--51--3791Chr07:26818040..26818064 (25 bp)
CTCGGCAAGAGAGCTGCAGAGAACA
LOC_Os07g44970
Os.33176.1.S1_at--1134--7071Chr07:26817929..26817953 (25 bp)
GTCAAGATGCCCACACCATTAGCTG
LOC_Os07g44970
Os.33176.1.S1_at--796--1291Chr07:26817925..26817949 (25 bp)
AGATGCCCACACCATTAGCTGGTGC
LOC_Os07g44970
Os.33176.1.S1_at--157--3671Chr07:26817899..26817923 (25 bp)
CTTAACGATGTTGTAGCTGTAACAA
LOC_Os07g44970
Os.33176.1.S1_at--1135--6271Chr07:26817893..26817917 (25 bp)
GATGTTGTAGCTGTAACAACTTGTA
LOC_Os07g44970
Os.33176.1.S1_at--1099--10371Chr07:26817752..26817776 (25 bp)
TTATTCCCTCTTTTAGGCTAGAAGG
LOC_Os07g44970
Target Sequence 
GCTGCTGCTACTAACAATGAGGACATTGAGCTGCCCGATGAGAGCGACGAGGAGGAAGACGATGTCCAAATTGCGGAGAA
GAGTGTTCCCGCTGCGGTGTTTGGAGAGCTCGGCAAGAGAGCTGCAGAGAACAGGGAGGAGGAAAGCTCTGGTGCCCAGG
AGAATGAGCAGCTTGGCGCCCTTGAGAGGATTAAGCGAAGGCGTCAATGATCTGCCACTGTCAAGATGCCCACACCATTA
GCTGGTGCNCTTAACGATGTTGTAGCTGTAACAACTTGTAAACATGATTNTGAGTGGTGTTTTTGCTCTTGTACAAGAAT
TTACGGNAGTTATTAATCCGTTGTTGATCTGCGACCATTTTTTCGTGTACTAACTATTGGGTACATTCCCCGCTTTTTAT
TCCCTCTTTTAGGCTAGAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33176.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis