Browse Element(s) Details


Os.34273.1.S1_at

Description gb:AK065371.1
DB_XREF= gi:32975389
TID=Os.34273.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34273 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU031682(R0503)~similar to GABA permease~unknown protein (P0660F12.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013023D09, full insert sequence.
FL= gb:AK065371.1 gb:AK072189.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7172011/11Amino acid permease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71670Os.1385.1.S1_at10/111+41860123..41862468Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71670Os.1385.2.S1_x_at7/111+41860123..41862468Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71680OsAffx.2458.1.S1_at11/111+41863826..41865169Glucan endo-1,3-beta-glucosidase GII precursor, putative
LOC_Os01g71690Os.42832.1.S1_at10/111+41866607..41872489recA protein, expressed
LOC_Os01g71690Os.25266.1.S1_at7/111+41866607..41872489recA protein, expressed
LOC_Os01g71700OsAffx.11817.1.S1_x_at11/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.1.S1_at11/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.2.S1_x_at1/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.3.S1_x_at1/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71710OsAffx.11817.3.S1_at11/111+41878886..41881353Amino acid permease family protein
LOC_Os01g71710OsAffx.11817.3.S1_x_at11/111+41878886..41881353Amino acid permease family protein
LOC_Os01g71710OsAffx.11817.1.S1_x_at1/111+41878886..41881353Amino acid permease family protein
LOC_Os01g71720Os.34273.1.S1_at11/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71720Os.34273.2.S1_x_at11/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71720Os.8825.2.S1_x_at1/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71720OsAffx.11817.2.S1_x_at1/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71740Os.18689.1.S1_at11/111+41890831..41893436Amino acid permease family protein, expressed
LOC_Os01g71740OsAffx.11817.2.S1_x_at7/111+41890831..41893436Amino acid permease family protein, expressed
LOC_Os01g71740OsAffx.11817.1.S1_x_at1/111+41890831..41893436Amino acid permease family protein, expressed
LOC_Os01g71750OsAffx.24007.1.S1_at11/111+41894022..41894426hypothetical protein
LOC_Os01g71760OsAffx.11817.2.S1_x_at11/111+41897599..41900156amino acid permease family protein, putative
LOC_Os01g71760OsAffx.11817.1.S1_x_at1/111+41897599..41900156amino acid permease family protein, putative
LOC_Os01g71770Os.8935.1.S1_at11/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71770Os.8935.2.S1_x_at11/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71770Os.54957.1.S1_at1/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71780Os.33738.1.S1_at11/111+41909073..41910780transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34273.1.S1_at--391--4731Chr01:41881977..41882001 (25 bp)
GCTGTGACGGCCCATAACTGTATGG
LOC_Os01g71720
Os.34273.1.S1_at--1150--6911Chr01:41881958..41881982 (25 bp)
GTATGGGCCGATGCATGTGTGCTAC
LOC_Os01g71720
Os.34273.1.S1_at--424--8671Chr01:41881941..41881965 (25 bp)
TGTGCTACGGCCCATGGAGTTCTAC
LOC_Os01g71720
Os.34273.1.S1_at--355--6731Chr01:41881923..41881947 (25 bp)
GTTCTACGGCTGACAAGGAAGCCCA
LOC_Os01g71720
Os.34273.1.S1_at--270--951Chr01:41881908..41881932 (25 bp)
AGGAAGCCCACGTACATGTAGCCTT
LOC_Os01g71720
Os.34273.1.S1_at--556--751Chr01:41881893..41881917 (25 bp)
ATGTAGCCTTGTTGGGCGGCCCAGT
LOC_Os01g71720
Os.34273.1.S1_at--720--8391Chr01:41881876..41881900 (25 bp)
GGCCCAGTAAGAGGCCGTTCTTTAT
LOC_Os01g71720
Os.34273.1.S1_at--348--171Chr01:41881853..41881877 (25 bp)
ATTTTGATTCGTATTCCCATGTCCT
LOC_Os01g71720
Os.34273.1.S1_at--504--4031Chr01:41881844..41881868 (25 bp)
CGTATTCCCATGTCCTTGGATGGAA
LOC_Os01g71720
Os.34273.1.S1_at--60--3151Chr01:41881820..41881844 (25 bp)
AATTCAACGGTCTACGATTCGGCTG
LOC_Os01g71720
Os.34273.1.S1_at--918--2711Chr01:41881749..41881773 (25 bp)
AAGCAGCATGCGTGCAATAATTCAA
LOC_Os01g71720
Target Sequence 
GCTGTGACGGCCCATAACTGTATGGGCCGATGCATGTGTGCTACGGCCCATGGAGTTCTACGGCTGACAAGGAAGCCCAC
GTACATGTAGCCTTGTTGGGCGGCCCAGTAAGAGGCCGTTCTTTATTTTGATTCGTATTCCCATGTCCTTGGATGGAAAT
TCAACGGTCTACGATTCGGCTGATTATGTTAGAAAAAGACAGGCATGAGGTACAGAACTATACTAAAAAAGCAGCATGCG
TGCAATAATTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34273.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis