Browse Element(s) Details


Os.34312.1.S1_at

Description gb:AK071918.1
DB_XREF= gi:32981941
TID=Os.34312.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34312 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GENSCAN etc. (OSJNBa0066H10.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013072M12, full insert sequence.
FL= gb:AK071918.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1247011/11expressed protein
LOC_Os05g441301/11Gamma-glutamyl hydrolase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12410Os.46012.2.S1_x_at8/117+7076372..7082059retrotransposon protein, putative, unclassified
LOC_Os07g12410Os.46012.3.S1_x_at7/117+7076372..7082059retrotransposon protein, putative, unclassified
LOC_Os07g12410Os.27088.1.A1_x_at5/117+7076372..7082059retrotransposon protein, putative, unclassified
LOC_Os07g12410Os.54691.1.S1_x_at1/117+7076372..7082059retrotransposon protein, putative, unclassified
LOC_Os07g12420OsAffx.10222.1.S1_x_at2/117+7082910..7085643hypothetical protein
LOC_Os07g12420Os.45902.1.A1_x_at2/117+7082910..7085643hypothetical protein
LOC_Os07g12420Os.10263.1.S1_at2/117+7082910..7085643hypothetical protein
LOC_Os07g12420Os.46808.2.S1_x_at1/117+7082910..7085643hypothetical protein
LOC_Os07g12430OsAffx.5300.2.S1_at11/117+7090152..7091812hypothetical protein
LOC_Os07g12430OsAffx.5300.1.S1_s_at10/117+7090152..7091812hypothetical protein
LOC_Os07g12430Os.27135.1.A1_at1/117+7090152..7091812hypothetical protein
LOC_Os07g12430OsAffx.17065.1.A1_s_at1/117+7090152..7091812hypothetical protein
LOC_Os07g12440OsAffx.28417.1.S1_at11/117+7093829..7094120hypothetical protein
LOC_Os07g12450OsAffx.28418.1.S1_at11/117+7095029..7095562hypothetical protein
LOC_Os07g12460OsAffx.10207.1.S1_x_at6/117+7104578..7104853hypothetical protein
LOC_Os07g12470Os.34312.1.S1_at11/117+7105271..7108429expressed protein
LOC_Os07g12480OsAffx.5301.1.S1_at11/117+7109061..7111043Protein kinase domain containing protein
LOC_Os07g12490Os.20010.1.S1_at9/117+7119023..7124714KH domain-containing protein, putative, expressed
LOC_Os07g12500Os.35344.18.S1_x_at10/117+7129728..7135775transposon protein, putative, Mutator sub-class
LOC_Os07g12500Os.35344.3.S1_x_at9/117+7129728..7135775transposon protein, putative, Mutator sub-class
LOC_Os07g12500OsAffx.22940.5.S1_x_at3/117+7129728..7135775transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0046900biological_processtetrahydrofolylpolyglutamate metabolism
GO:0005773cellular_componentvacuole
GO:0008464molecular_functiongamma-glutamyl hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34312.1.S1_at--835--211Chr07:7107854..7107878 (25 bp)
ATTTGTCACCAAAAGCACTTCCATG
LOC_Os07g12470
Os.34312.1.S1_at--1157--7852Chr07:7107980..7108004 (25 bp)
GGTATGCCTGCATTCTATTTTCAAT
LOC_Os07g12470
Os.34312.1.S1_at--266--3211Chr07:7108001..7108025 (25 bp)
CAATGGTTTCTTAATCTTGTGCTTA
LOC_Os07g12470
Os.34312.1.S1_at--422--10831Chr07:7108017..7108041 (25 bp)
TTGTGCTTAACTTTGCTGCAGCCAA
LOC_Os07g12470
Os.34312.1.S1_at--703--4751Chr07:7108031..7108055 (25 bp)
GCTGCAGCCAAACACTGTCGTAGAT
LOC_Os07g12470
Os.34312.1.S1_at--167--671Chr07:7108089..7108113 (25 bp)
ATGAAGTCAATTGCTCTCCAGAAGA
LOC_Os07g12470
Os.34312.1.S1_at--578--1411Chr07:7108111..7108135 (25 bp)
AGACAAGGTCAATCACTGCTGTGCT
LOC_Os07g12470
Os.34312.1.S1_at--344--391Chr07:7108122..7108146 (25 bp)
ATCACTGCTGTGCTGCCAAACAAAT
LOC_Os07g12470
Os.34312.1.S1_at--276--411Chr07:7108145..7108169 (25 bp)
ATCAGTTGTTCTCCAGAGCGCCAGG
LOC_Os07g12470
Os.34312.1.S1_at--166--5351Chr07:7108207..7108231 (25 bp)
GAAGTTCGTGTATGCTTGGAGCTGC
LOC_Os07g12470
Os.34312.1.S1_at--942--6651Chr07:7108235..7108259 (25 bp)
GTTGAGAGCTTACTAACTTCGTGGC
LOC_Os07g12470
Target Sequence 
ATTTGTCACCAAAAGCACTTCCATGTGTAATATCTTTATACTGAATAAAATCGAAATAGTAATGATCAAAGCATTTACTG
AAGATTGTGTCAATGGTCTAAGACGACAATAGATGTAATTCAATTAGGTATGCCTGCATTCTATTTTCAATGGTTTCTTA
ATCTTGTGCTTAACTTTGCTGCAGCCAAACACTGTCGTAGATGAAGTGGTCAAGATTGTCTGGAAGGAGCAAAACATGAA
GTCAATTGCTCTCCAGAAGACAAGGTCAATCACTGCTGTGCTGCCAAACAAATCAGTTGTTCTCCAGAGCGCCAGGTCAA
TCACTGTTGAGTTCGAGAACTTGAGCGAAAACTGAAGTTCGTGTATGCTTGGAGCTGCAGTGTTGAGAGCTTACTAACTT
CGTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34312.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis