Browse Element(s) Details


Os.35387.1.S1_at

Description gb:AK067740.1
DB_XREF= gi:32977758
TID=Os.35387.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35387 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013119L21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119L21, full insert sequence.
FL= gb:AK067740.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2703011/11Lipid phosphate phosphatase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26990OsAffx.29407.3.S1_x_at8/118+16355631..16357485Response regulator receiver domain containing protein
LOC_Os08g26990OsAffx.29407.3.S1_at7/118+16355631..16357485Response regulator receiver domain containing protein
LOC_Os08g26990OsAffx.29407.1.S1_at2/118+16355631..16357485Response regulator receiver domain containing protein
LOC_Os08g27000Os.41695.15.S1_s_at11/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27000Os.41695.2.S1_x_at7/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27000Os.41695.3.S1_x_at7/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27000Os.41695.5.S1_x_at2/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27000Os.41695.4.S1_x_at1/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27010Os.16772.1.S1_at11/118+16373296..16377474expressed protein
LOC_Os08g27020OsAffx.5946.1.S1_at11/118+16379839..16380353expressed protein
LOC_Os08g27030Os.35387.1.S1_at11/118+16380889..16385047Lipid phosphate phosphatase 2, putative, expressed
LOC_Os08g27040Os.20657.1.S1_at11/118+16386668..16391090Lipid phosphate phosphatase 2, putative, expressed
LOC_Os08g27040Os.51117.1.S1_at11/118+16386668..16391090Lipid phosphate phosphatase 2, putative, expressed
LOC_Os08g27050Os.25180.1.S1_at11/118+16392609..16398391hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g27050OsAffx.32230.1.A1_at6/118+16392609..16398391hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g27050OsAffx.32230.1.A1_x_at4/118+16392609..16398391hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g27060OsAffx.5947.1.S1_at11/118+16400080..16401081hypothetical protein
LOC_Os08g27070Os.10188.1.S1_at11/118+16405483..16409850expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006644biological_processphospholipid metabolism
GO:0006950biological_processresponse to stress
GO:0009738biological_processabscisic acid mediated signaling
GO:0005887cellular_componentintegral to plasma membrane
GO:0008195molecular_functionphosphatidate phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35387.1.S1_at--42--2431Chr08:16381671..16381695 (25 bp)
AAAACTATGCCTAGTCTTTCTGCCT
LOC_Os08g27030
Os.35387.1.S1_at--545--5011Chr08:16381487..16381601 (25 bp)
GCAGGCGGCATTATAGGTCTCACAG
LOC_Os08g27030
Os.35387.1.S1_at--699--7151Chr08:16381471..16381495 (25 bp)
GTCTCACAGTTGCTTCGTTTTGTTA
LOC_Os08g27030
Os.35387.1.S1_at--558--10451Chr08:16381449..16381473 (25 bp)
TTACCTGCAATTTTTCCCATATCCA
LOC_Os08g27030
Os.35387.1.S1_at--1022--9111Chr08:16381333..16381443 (25 bp)
TGCTGATGCTATATGGCCTCATGCT
LOC_Os08g27030
Os.35387.1.S1_at--252--10691Chr08:16381305..16381329 (25 bp)
TTCCAACTGCTAGCCGAGTCACGAA
LOC_Os08g27030
Os.35387.1.S1_at--683--7651Chr08:16381252..16381276 (25 bp)
GGGATGGACAGAGACCGACGCTTTC
LOC_Os08g27030
Os.35387.1.S1_at--987--5791Chr08:16381236..16381260 (25 bp)
GACGCTTTCCATGAAGGCGCTGGTG
LOC_Os08g27030
Os.35387.1.S1_at--400--7311Chr08:16381214..16381238 (25 bp)
GTGCTGTTGCGCTGAGAGACACAAG
LOC_Os08g27030
Os.35387.1.S1_at--306--2211Chr08:16381194..16381218 (25 bp)
ACAAGCCTGGTTCTAGACTCGATGG
LOC_Os08g27030
Os.35387.1.S1_at--18--6751Chr08:16381120..16381144 (25 bp)
GTTCATTGTTCTGTCTTCATCAGAG
LOC_Os08g27030
Target Sequence 
AAAACTATGCCTAGTCTTTCTGCCTCTACTTGTTGCATCACTTGTGGCAGTCTCTCGGGTTGACGATTACTGGCATCACT
GGCAAGATGTATTTGCAGGCGGCATTATAGGTCTCACAGTTGCTTCGTTTTGTTACCTGCAATTTTTCCCATATCCATTT
GATGCTGATGCTATATGGCCTCATGCTCACTTCCAACTGCTAGCCGAGTCACGAAGCAACGGTAATGAAAACTCACACAA
CATGGGATGGACAGAGACCGACGCTTTCCATGAAGGCGCTGGTGCTGTTGCGCTGAGAGACACAAGCCTGGTTCTAGACT
CGATGGAGTCTGGCAGGAGGTTTTGAAACATGTGAAAGGGAAGTATATTGAAGATGTTCATTGTTCTGTCTTCATCAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35387.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis