Browse Element(s) Details


Os.37621.3.S1_at

Description gb:AU166305
DB_XREF= gi:12404704
DB_XREF=AU166305
CLONE=C10793
TID=Os.37621.3
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.37621 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor serinethreonine kinase (OJ1212_B09.4), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0234011/11Thaumatin family protein, expressed
LOC_Os04g236001/11D-mannose binding lectin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02280Os.45831.2.S1_at11/111+704142..711124NB-ARC domain containing protein
LOC_Os01g02280Os.45831.2.S1_x_at11/111+704142..711124NB-ARC domain containing protein
LOC_Os01g02280OsAffx.23035.1.S1_x_at11/111+704142..711124NB-ARC domain containing protein
LOC_Os01g02290Os.1978.1.S1_at11/111+717432..720088Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02290OsAffx.23090.4.S1_x_at1/111+717432..720088Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02290OsAffx.23090.9.S1_x_at1/111+717432..720088Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02300Os.27046.2.S1_x_at11/111+720509..723123receptor kinase ORK10, putative, expressed
LOC_Os01g02300Os.27046.1.S1_at10/111+720509..723123receptor kinase ORK10, putative, expressed
LOC_Os01g02310OsAffx.10878.1.S1_at11/111+725779..727732Thaumatin family protein, expressed
LOC_Os01g02310OsAffx.10878.2.S1_x_at11/111+725779..727732Thaumatin family protein, expressed
LOC_Os01g02320Os.34013.2.S1_x_at11/111+727952..734822TAK14, putative, expressed
LOC_Os01g02320Os.34013.1.S1_at10/111+727952..734822TAK14, putative, expressed
LOC_Os01g02320OsAffx.22827.1.S1_x_at1/111+727952..734822TAK14, putative, expressed
LOC_Os01g02340Os.37621.3.S1_at11/111+735730..738023Thaumatin family protein, expressed
LOC_Os01g02340OsAffx.10878.2.S1_x_at1/111+735730..738023Thaumatin family protein, expressed
LOC_Os01g02350OsAffx.22827.1.S1_x_at11/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02350Os.40177.1.S1_at11/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02350Os.34013.2.S1_x_at2/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02360Os.45539.1.S1_at11/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.1.S1_x_at4/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.4.S1_x_at3/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.2.S1_x_at1/111+742254..745747LRK33, putative, expressed
LOC_Os01g02370Os.52696.1.S1_at10/111+748882..751794receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02380NANA1+753696..758852retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009621biological_processresponse to pathogenic fungi
GO:0004672molecular_functionprotein kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37621.3.S1_at--253--10611Chr01:737184..737208 (25 bp)
TTCTGATTTTGGTCTATGCAAGCTT
LOC_Os01g02340
Os.37621.3.S1_at--653--5431Chr01:737355..737379 (25 bp)
GAACCTTGACACTTCCAGGTCTGAA
LOC_Os01g02340
Os.37621.3.S1_at--784--10872Chr01:737431..737455 (25 bp)
TTGGCAGATTTGATTGACAAGCACA
LOC_Os01g02340
Os.37621.3.S1_at--308--2991Chr01:737458..737482 (25 bp)
AATGATATGCAAGTACACCGGCAAG
LOC_Os01g02340
Os.37621.3.S1_at--64--7091Chr01:737560..737584 (25 bp)
GTCAAAGTTTTGGAAGGCACCACAA
LOC_Os01g02340
Os.37621.3.S1_at--785--8251Chr01:737575..737599 (25 bp)
GGCACCACAAGTATTGAGACTGACA
LOC_Os01g02340
Os.37621.3.S1_at--915--5671Chr01:737596..737620 (25 bp)
GACATAGACCATGACTTCGTCGCAA
LOC_Os01g02340
Os.37621.3.S1_at--474--5691Chr01:737608..737632 (25 bp)
GACTTCGTCGCAACAAATCCAGTAA
LOC_Os01g02340
Os.37621.3.S1_at--475--3451Chr01:737627..737651 (25 bp)
CAGTAAGCTTTGGTGTTGCTGGAAT
LOC_Os01g02340
Os.37621.3.S1_at--546--10711Chr01:737642..737666 (25 bp)
TTGCTGGAATTGTGGACTCCGACCC
LOC_Os01g02340
Os.37621.3.S1_at--322--10011Chr01:737672..737696 (25 bp)
TAGCATCTAATTTATCAGGCCCCAG
LOC_Os01g02340
Target Sequence 
TTCTGATTTTGGTCTATGCAAGCTTATTGATCGAGATAAGAGTCAAGTGATTACCAGAATGAGAGGCACACCTGGATATT
TAGCTCCAGAATGGCTGACATCGCAGATCACAGAAAAGGCAGATGTCTATAGCTTTGGCATAGTAGTCATGGAAATGATC
AGTGGGAGAAAGAACCTTGACACTTCCAGGTCTGAACAGAGTATCCATCTAATTACCTTACTGCAAGAAAAGGTGAAGGG
TGATCAGTTGGCAGATTTGATTGACAAGCACAGCAATGATATGCAAGTACACCGGCAAGAAATAATTGAGATGATGAAAC
TCGCAATGTGGTGTTTGCAGATTGATTGCAAAAGAAGGCCTCAAATGTCTGAGGTTGTCAAAGTTTTGGAAGGCACCACA
AGTATTGAGACTGACATAGACCATGACTTCGTCGCAACAAATCCAGTAAGCTTTGGTGTTGCTGGAATTGTGGACTCCGA
CCCCCCTGTAGCATCTAATTTATCAGGCCCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37621.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis