Browse Element(s) Details


Os.38157.1.S1_s_at

Description gb:AK069041.1
DB_XREF= gi:32979065
TID=Os.38157.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.38157 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023004J15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004J15, full insert sequence.
FL= gb:AK069041.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3991011/11ATP-binding cassette sub-family F member 2, putative, expressed
LOC_Os07g145141/11retrotransposon protein, putative, unclassified, expressed
LOC_Os04g529401/11SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os10g013801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39870Os.6306.1.S1_at11/119+22854836..228586012-phosphoglycerate kinase, putative, expressed
LOC_Os09g39870Os.6306.1.S2_at11/119+22854836..228586012-phosphoglycerate kinase, putative, expressed
LOC_Os09g39880OsAffx.9045.1.S1_x_at4/119+22862064..22866509hypothetical protein
LOC_Os09g39880OsAffx.9045.1.S1_at3/119+22862064..22866509hypothetical protein
LOC_Os09g39890Os.31312.1.S1_at8/119+22867656..22871158retrotransposon protein, putative, unclassified
LOC_Os09g39890Os.31312.5.S1_x_at5/119+22867656..22871158retrotransposon protein, putative, unclassified
LOC_Os09g39890Os.31312.2.S1_x_at4/119+22867656..22871158retrotransposon protein, putative, unclassified
LOC_Os09g39900NANA9+22871482..22877637retrotransposon protein, putative, unclassified
LOC_Os09g39910Os.38157.1.S1_at11/119+22882564..22887083ATP-binding cassette sub-family F member 2, putative, expressed
LOC_Os09g39910Os.38157.1.S1_s_at11/119+22882564..22887083ATP-binding cassette sub-family F member 2, putative, expressed
LOC_Os09g39910Os.15747.1.A1_at10/119+22882564..22887083ATP-binding cassette sub-family F member 2, putative, expressed
LOC_Os09g39920Os.55181.1.S1_at11/119+22896708..22902150beta-1,4-mannan synthase, putative, expressed
LOC_Os09g39920OsAffx.19468.2.S1_at1/119+22896708..22902150beta-1,4-mannan synthase, putative, expressed
LOC_Os09g39930Os.12654.1.S1_at11/119+22902539..22904349Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os09g39940Os.21629.1.S1_at11/119+22907376..22908312Plastocyanin-like domain containing protein, expressed
LOC_Os09g39950Os.50339.1.S1_at11/119+22908515..22909225Pollen-specific protein C13 precursor, putative, expressed
LOC_Os09g39960Os.52791.1.S1_at11/119+22911086..22916239Dynamin-related protein 1C, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38157.1.S1_s_at--99--8851Chr09:22883213..22883237 (25 bp)
TGATCTCTCTCTCTTAGTTAAGTTG
LOC_Os09g39910
Os.38157.1.S1_s_at--432--1251Chr09:22883193..22883217 (25 bp)
AGTTGGATGCTTGTCACGGATGTTT
LOC_Os09g39910
Os.38157.1.S1_s_at--1034--1911Chr09:22883178..22883202 (25 bp)
ACGGATGTTTGTACCTGATCTCCAT
LOC_Os09g39910
Os.38157.1.S1_s_at--255--3871Chr09:22883164..22883188 (25 bp)
CTGATCTCCATCAACTACATCTGAT
LOC_Os09g39910
Os.38157.1.S1_s_at--1117--9871Chr09:22883149..22883173 (25 bp)
TACATCTGATGCTATAGCCCATATG
LOC_Os09g39910
Os.38157.1.S1_s_at--520--7871Chr09:22882940..22882964 (25 bp)
GGTTTGTTGGCGGTGCACATGCATA
LOC_Os09g39910
Os.38157.1.S1_s_at--915--90515Chr12:10202843..10202862 (20 bp)
TGCATAAGATATACTTCCTCCGTTT
NONE
Os.38157.1.S1_s_at--168--7871Chr09:22882775..22882799 (25 bp)
GGTTTGCACTTGCATGATCACCTGC
LOC_Os09g39910
Os.38157.1.S1_s_at--350--6451Chr09:22882760..22882784 (25 bp)
GATCACCTGCTGTAGTTATTATTAT
LOC_Os09g39910
Os.38157.1.S1_s_at--1123--10171Chr09:22882741..22882765 (25 bp)
TATTATCAGTGACCAAGTTCCCCTA
LOC_Os09g39910
Os.38157.1.S1_s_at--974--2811Chr09:22882727..22882751 (25 bp)
AAGTTCCCCTAGCTAGCAGTAGCAC
LOC_Os09g39910
Target Sequence 
TGATCTCTCTCTCTTAGTTAAGTTGGATGCTTGTCACGGATGTTTGTACCTGATCTCCATCAACTACATCTGATGCTATA
GCCCATATGATGTACCGTCCTCTTCTTGGGGTCTCTGGAGAATGAGGAAACAGCAAGATCCAGCCAGCATAGCATGTATG
TATAGTGTAATTAGCTGGTTTGTTGGCGGTGCACATGCATAAGATATACTTCCTCCGTTTCATATTATAATACTATCTAT
TATTGCCCACATTCATATATATGTCTAGATTCATTAGCATCTATATGAATGTGGGCAATNGATAGAAAGTCTTATAATAT
GAAACGGAGGGAGTANNTATCTTGGTTTGCACTTGCATGATCACCTGCTGTAGTTATTATTATCAGTGACCAAGTTCCCC
TAGCTAGCAGTAGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38157.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis