Browse Element(s) Details


Os.38268.2.S1_s_at

Description gb:AK121469.1
DB_XREF= gi:37991092
TID=Os.38268.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38268 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0496H05.16 (P0496H05.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023148D09, full insert sequence.
FL= gb:AK121469.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4916411/11expressed protein
LOC_Os01g381009/11expressed protein
LOC_Os06g456501/11MADS-box protein ZMM17, putative, expressed
LOC_Os03g074101/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49130Os.53738.1.S1_at11/115+28099855..2810542116S rRNA processing protein RimM family, putative, expressed
LOC_Os05g49140Os.11617.1.S1_at11/115+28105490..28110750Protein kinase domain containing protein, expressed
LOC_Os05g49150Os.11175.1.S1_at11/115+28118856..28120955Eukaryotic translation initiation factor 3 subunit 7, putative, expressed
LOC_Os05g49160Os.10680.1.S1_at10/115+28122194..28125363negatively light-regulated protein, putative, expressed
LOC_Os05g49164Os.15891.1.A1_s_at11/115+28127135..28129253expressed protein
LOC_Os05g49164Os.38268.2.S1_s_at11/115+28127135..28129253expressed protein
LOC_Os05g49164Os.56140.1.S1_x_at7/115+28127135..28129253expressed protein
LOC_Os05g49164Os.38268.3.S1_x_at3/115+28127135..28129253expressed protein
LOC_Os05g49170Os.13917.1.S1_at10/115+28130538..28132773cold acclimation protein COR413-TM1, putative, expressed
LOC_Os05g49180Os.8463.1.S3_at11/115+28136875..28145528expressed protein
LOC_Os05g49180Os.8463.1.S2_at11/115+28136875..28145528expressed protein
LOC_Os05g49180Os.8463.1.S1_at11/115+28136875..28145528expressed protein
LOC_Os05g49200Os.8298.1.S1_at11/115+28148627..28154216Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os05g49200Os.13741.1.S1_s_at1/115+28148627..28154216Aspartic proteinase oryzasin-1 precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008360biological_processregulation of cell shape
GO:0009908biological_processflower development
GO:0009911biological_processpositive regulation of flower development
GO:0009933biological_processmeristem organization
GO:0010023biological_processproanthocyanidin biosynthesis
GO:0045941biological_processpositive regulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38268.2.S1_s_at--629--7635Chr08:14559249..14559273 (25 bp)
GGGAGCCTGCCCTATGTTGTTAGCA
NONE
Os.38268.2.S1_s_at--1030--8137Chr11:8042061..8042249 (25 bp)
GGACAATAGCTCAATTGACTGGGAA
NONE
Os.38268.2.S1_s_at--255--4855Chr08:14559629..14559653 (25 bp)
GCTAAATGTTAAAGAGGTGCATCTA
NONE
Os.38268.2.S1_s_at--260--7338Chr08:14559645..14559669 (25 bp)
GTGCATCTAACTTTTGTACCCAGTG
NONE
Os.38268.2.S1_s_at--557--2515Chr08:14559653..14559677 (25 bp)
AACTTTTGTACCCAGTGAACTGCAA
NONE
Os.38268.2.S1_s_at--850--8755Chr08:14559659..14559683 (25 bp)
TGTACCCAGTGAACTGCAAATCTGC
NONE
Os.38268.2.S1_s_at--433--1215Chr08:14559703..14559727 (25 bp)
AGTTTCTTTGGATTCAGATCAAAAT
NONE
Os.38268.2.S1_s_at--428--6455Chr08:14559719..14559743 (25 bp)
GATCAAAATAGCTCAACATGGGAAT
NONE
Os.38268.2.S1_s_at--611--3434Chr08:14559752..14559776 (25 bp)
CAGAGGATGGGCAATTCTTGGAAAA
NONE
Os.38268.2.S1_s_at--688--193Chr05:28129213..28129237 (25 bp)
ATTTCTTGTCGTTGAATGTGATCAT
LOC_Os05g49164
Os.38268.2.S1_s_at--1043--771Chr05:28129228..28129252 (25 bp)
ATGTGATCATGTCCCATTATTTTGG
LOC_Os05g49164
Target Sequence 
GGGAGCCTGCCCTATGTTGTTAGCAGCTTTCTTCACTCCAAGTCATTCTTGCTGCCTGTGGTCTTGGTAGTTTCTTTTTT
GTGTTGTCAATTTAATTATTATGATTTCCCATGTGCTCGGCTATTGGTGTTCTTGTTTTTATCTGTTTTGTTTCAGGGTG
TCATTACTATGGAGTAGATCATTTTTTTCTTATTTTTTTCAATGCCTTGTAAAATAACCAACTAGCAGGGATGTTCATAA
ATTTCTCCCTTTTGTTTGGTTTTTTTCAGACATATATATATAATGAAGGCATATATACACAAAAGGAGGAGCTGTTTGAG
GGTCTAAAGGACAATAGCTCAATTGACTGGGAAGCTGTTGTCATATGCTGAGAGCAATCTGCTAAATGTTAAAGAGGTGC
ATCTAACTTTTGTACCCAGTGAACTGCAAATCTGCACCTTCATTTTTGATTAATAGTTTCTTTGGATTCAGATCAAAATA
GCTCAACATGGGAATTTTTCTAGCAGAGGATGGGCAATTCTTGGAAAATACTATATATTTCTTGTCGTTGAATGTGATCA
TGTCCCATTATTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38268.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis