Browse Element(s) Details


Os.38313.1.S1_at

Description gb:AK070174.1
DB_XREF= gi:32980198
TID=Os.38313.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.38313 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023042D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042D01, full insert sequence.
FL= gb:AK070174.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5644010/11ENT domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56380Os.35344.18.S1_x_at8/114+33395871..33402334transposon protein, putative, Mutator sub-class
LOC_Os04g56380OsAffx.22940.5.S1_at7/114+33395871..33402334transposon protein, putative, Mutator sub-class
LOC_Os04g56380Os.35344.3.S1_x_at7/114+33395871..33402334transposon protein, putative, Mutator sub-class
LOC_Os04g56380OsAffx.22940.5.S1_x_at4/114+33395871..33402334transposon protein, putative, Mutator sub-class
LOC_Os04g56390Os.51574.1.S1_at11/114+33404069..33404856expressed protein
LOC_Os04g56400Os.7879.1.S1_at11/114+33405260..33411952Glutamine synthetase, chloroplast precursor, putative, expressed
LOC_Os04g56400Os.7879.2.S1_at11/114+33405260..33411952Glutamine synthetase, chloroplast precursor, putative, expressed
LOC_Os04g56400Os.19294.1.S1_at3/114+33405260..33411952Glutamine synthetase, chloroplast precursor, putative, expressed
LOC_Os04g56400Os.50043.1.A1_at1/114+33405260..33411952Glutamine synthetase, chloroplast precursor, putative, expressed
LOC_Os04g56420Os.54165.1.S1_at10/114+33416837..33419323expressed protein
LOC_Os04g56430Os.1606.1.S1_at11/114+33422225..33423252receptor-like protein kinase 6, putative, expressed
LOC_Os04g56440Os.38313.1.S1_at10/114+33426039..33431062ENT domain containing protein, expressed
LOC_Os04g56450Os.172.2.S1_a_at11/114+33430036..33434781Protein phosphatase 2C containing protein, expressed
LOC_Os04g56460OsAffx.14435.1.S1_at11/114+33439264..33440325BTB/POZ domain containing protein, expressed
LOC_Os04g56470OsAffx.14436.1.S1_at11/114+33442868..33444979amino acid transporter family protein, putative, expressed
LOC_Os04g56470Os.26885.1.A1_at1/114+33442868..33444979amino acid transporter family protein, putative, expressed
LOC_Os04g56480Os.27464.1.S1_s_at9/114+33446004..33453652Protein pelota, putative, expressed
LOC_Os04g56480Os.49404.1.S1_at8/114+33446004..33453652Protein pelota, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38313.1.S1_at--616--3371Chr04:33430232..33430256 (25 bp)
CACCATCTCCAATCTGTCTTTGATG
LOC_Os04g56440
Os.38313.1.S1_at--198--10511Chr04:33430258..33430282 (25 bp)
TTAATCAAACGCTCCGATCTGTCTT
LOC_Os04g56440
Os.38313.1.S1_at--572--3151Chr04:33430341..33430365 (25 bp)
AATTCTCGTCGGATCTCGATTCTCA
LOC_Os04g56440
Os.38313.1.S1_at--13--4651NONE
GCGTCCAGCATCACACACATAAAAA
NONE
Os.38313.1.S1_at--133--6271Chr04:33430437..33430461 (25 bp)
GATGTGGTTGCTCTGCCATAAACTC
LOC_Os04g56440
Os.38313.1.S1_at--531--9011Chr04:33430462..33430486 (25 bp)
TGCAATCTGAATCTGGTTCGGCCAT
LOC_Os04g56440
Os.38313.1.S1_at--343--2491Chr04:33430491..33430515 (25 bp)
AACAGCATGGATTCTCTACTTCTCT
LOC_Os04g56440
Os.38313.1.S1_at--152--371Chr04:33430542..33430566 (25 bp)
ATAATGCTGTCACTGTCTCACTGAT
LOC_Os04g56440
Os.38313.1.S1_at--675--251Chr04:33430650..33430674 (25 bp)
ATATCCACGTACATTGAACCTAGGG
LOC_Os04g56440
Os.38313.1.S1_at--565--10051Chr04:33430670..33430694 (25 bp)
TAGGGAAACGATCCAGTCTCCCGTA
LOC_Os04g56440
Os.38313.1.S1_at--869--6951Chr04:33430692..33430716 (25 bp)
GTAGCAATACAACACGACCATCAAA
LOC_Os04g56440
Target Sequence 
CACCATCTCCAATCTGTCTTTGATGATTAATCAAACGCTCCGATCTGTCTTCGATGATATCTTGTGTGGTGCCGGCTTCC
CTGCCCTCGACACGGGCACGACACGCCGCAATTCTCGTCGGATCTCGATTCTCACCGCCGGACGGCCGGTCAGGATGGAG
AGCTCCAGGGCGTCCAGCATCACACACATAAAAAACATGCAGTTTGAGATGTGGTTGCTCTGCCATAAACTCTGCAATCT
GAATCTGGTTCGGCCATGTAGAACAGCATGGATTCTCTACTTCTCTTCCAACCCACCAAACTGCAGAGATACATAATGCT
GTCACTGTCTCACTGATGTCTACAGTAATAACAAGAATGGCTACTAAGTCAAACTTGGCTCACTGGAAGTGGAGGATACA
AACAAATAAATAGAGGAGTAATATCCACGTACATTGAACCTAGGGAAACGATCCAGTCTCCCGTAGCAATACAACACGAC
CATCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38313.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis