Browse Element(s) Details


Os.38512.1.S1_x_at

Description gb:BI803731
DB_XREF= gi:16576435
DB_XREF=H117F06
CLONE=H117F06
TID=Os.38512.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.38512 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g267206/11Prolamin PPROL 14 precursor, putative, expressed
LOC_Os05g267705/11Prolamin PPROL 14 precursor, putative, expressed
LOC_Os05g267505/11Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g266904/11Prolamin PPROL 14 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26660Os.53929.1.S1_at11/115+15404241..15410018EF hand family protein, expressed
LOC_Os05g26670OsAffx.27028.1.S1_at11/115+15413502..15414040hypothetical protein
LOC_Os05g26670Os.8626.2.S1_at2/115+15413502..15414040hypothetical protein
LOC_Os05g26670Os.8626.3.S1_s_at1/115+15413502..15414040hypothetical protein
LOC_Os05g26680NANA5+15416574..15418571retrotransposon protein, putative, unclassified
LOC_Os05g26690Os.8502.5.S1_x_at7/115+15424407..15424868Prolamin PPROL 14 precursor, putative
LOC_Os05g26690Os.8502.7.S1_x_at6/115+15424407..15424868Prolamin PPROL 14 precursor, putative
LOC_Os05g26690Os.38512.1.S1_x_at4/115+15424407..15424868Prolamin PPROL 14 precursor, putative
LOC_Os05g26690Os.8502.4.S1_at1/115+15424407..15424868Prolamin PPROL 14 precursor, putative
LOC_Os05g26700OsAffx.27027.1.S1_at10/115+15427258..15427602hypothetical protein
LOC_Os05g26700OsAffx.27027.1.S1_x_at10/115+15427258..15427602hypothetical protein
LOC_Os05g26710OsAffx.16205.1.S1_at2/115+15431644..15433890hypothetical protein
LOC_Os05g26720Os.38512.1.S1_x_at6/115+15434429..15435077Prolamin PPROL 14 precursor, putative, expressed
LOC_Os05g26720Os.8502.5.S1_x_at4/115+15434429..15435077Prolamin PPROL 14 precursor, putative, expressed
LOC_Os05g26720Os.8502.7.S1_x_at3/115+15434429..15435077Prolamin PPROL 14 precursor, putative, expressed
LOC_Os05g26730NANA5+15435865..15438524retrotransposon protein, putative, LINE subclass
LOC_Os05g26740OsAffx.27523.3.S1_at5/115+15438951..15443813retrotransposon protein, putative, unclassified
LOC_Os05g26740OsAffx.27523.2.S1_at5/115+15438951..15443813retrotransposon protein, putative, unclassified
LOC_Os05g26740OsAffx.27523.3.S1_x_at4/115+15438951..15443813retrotransposon protein, putative, unclassified
LOC_Os05g26740OsAffx.27523.4.S1_at3/115+15438951..15443813retrotransposon protein, putative, unclassified
LOC_Os05g26740Os.6502.1.A1_at2/115+15438951..15443813retrotransposon protein, putative, unclassified
LOC_Os05g26740Os.6502.1.A1_x_at1/115+15438951..15443813retrotransposon protein, putative, unclassified
LOC_Os05g26750Os.8502.5.S1_x_at5/115+15446283..15446909Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g26750Os.38512.1.S1_x_at5/115+15446283..15446909Prolamin PPROL 4A precursor, putative, expressed
LOC_Os05g26760NANA5+15449151..15450765expressed protein
LOC_Os05g26770Os.8502.5.S1_x_at6/115+15452195..15452772Prolamin PPROL 14 precursor, putative, expressed
LOC_Os05g26770Os.38512.1.S1_x_at5/115+15452195..15452772Prolamin PPROL 14 precursor, putative, expressed
LOC_Os05g26770Os.8502.7.S1_x_at4/115+15452195..15452772Prolamin PPROL 14 precursor, putative, expressed
LOC_Os05g26780NANA5+15457106..15458983transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38512.1.S1_x_at--30--3411NONE
CAGCTTAGGCTGGTGGCGCAACAGT
NONE
Os.38512.1.S1_x_at--1045--1551NONE
AGCTTAGGCTGGTGGCGCAACAGTC
NONE
Os.38512.1.S1_x_at--742--4891Chr05:15446593..15446722 (25 bp)
GCTTAGGCTGGTGGCGCAACAGTCT
LOC_Os05g26750
Os.38512.1.S1_x_at--93--3671NONE
CTTAGGCTGGTGGCGCAACAGTCTC
NONE
Os.38512.1.S1_x_at--249--10092Chr05:15452460..15452483 (24 bp)
TAGGCTGGTGGCGCAACAGTCTCAC
LOC_Os05g26770
Os.38512.1.S1_x_at--1122--3431Chr05:15434742..15434765 (24 bp)
CAGTCTCACTATCAGGATATTAACG
LOC_Os05g26720
Os.38512.1.S1_x_at--6--3751NONE
CTCAAGCTCCAGCTCAAGCTCTGTT
NONE
Os.38512.1.S1_x_at--251--4814Chr05:15452333..15452357 (25 bp)
GCTCTGTTGGCTTTGAACTTGCCAT
LOC_Os05g26770
Os.38512.1.S1_x_at--807--3774Chr05:15452332..15452356 (25 bp)
CTCTGTTGGCTTTGAACTTGCCATC
LOC_Os05g26770
Os.38512.1.S1_x_at--265--9474Chr05:15452331..15452355 (25 bp)
TCTGTTGGCTTTGAACTTGCCATCT
LOC_Os05g26770
Os.38512.1.S1_x_at--1084--8814Chr05:15452329..15452353 (25 bp)
TGTTGGCTTTGAACTTGCCATCTAG
LOC_Os05g26770
Target Sequence 
CAGCTTAGGCTGGTGGCGCAACAGTCTCACTATCAGGATATTAACGNTTGTTCAGGCCATAGGGCAGCAGCTACAACTCC
AGCAGTTTGATGATCTCTACTTTGATCGGAATCTAGCTCAAGCTCCAGCTCAAGCTCTGTTGGCTTTGAACTTGCCATCT
AG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38512.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis