Browse Element(s) Details


Os.38796.1.S1_s_at

Description gb:AU091931
DB_XREF= gi:8404577
DB_XREF=AU091931
CLONE=E30826
TID=Os.38796.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.38796 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_188189.1 (A.thaliana) putative zinc finger protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1092011/11Zinc finger protein ZF2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10880OsAffx.26224.2.S1_at1/112+5775949..5777385Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os02g10890OsAffx.11983.1.S1_at11/112+5779673..5779987hypothetical protein
LOC_Os02g10900OsAffx.24191.1.S1_at11/112+5785295..5788769NB-ARC domain containing protein, expressed
LOC_Os02g10910Os.35344.3.S1_x_at9/112+5790143..5796042transposon protein, putative, Mutator sub-class
LOC_Os02g10910Os.35344.18.S1_x_at7/112+5790143..5796042transposon protein, putative, Mutator sub-class
LOC_Os02g10910OsAffx.22940.5.S1_x_at1/112+5790143..5796042transposon protein, putative, Mutator sub-class
LOC_Os02g10920Os.38796.1.S1_s_at11/112+5798921..5806395Zinc finger protein ZF2, putative, expressed
LOC_Os02g10920Os.10555.1.S1_a_at11/112+5798921..5806395Zinc finger protein ZF2, putative, expressed
LOC_Os02g10920Os.22458.1.S1_at1/112+5798921..5806395Zinc finger protein ZF2, putative, expressed
LOC_Os02g10930OsAffx.24192.1.S1_at11/112+5806604..5806954hypothetical protein
LOC_Os02g10940Os.52379.1.S1_s_at11/112+5812094..5813493TPR Domain containing protein, expressed
LOC_Os02g10950OsAffx.2571.1.S1_at11/112+5818597..5819181hypothetical protein
LOC_Os02g10960OsAffx.24194.1.S1_at11/112+5824528..5825141hypothetical protein
LOC_Os02g10970Os.6240.1.A1_at11/112+5826295..5834383peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38796.1.S1_s_at--512--4671Chr02:5799363..5799387 (25 bp)
GCGGGACTCCGGTAGCGCTATGACA
LOC_Os02g10920
Os.38796.1.S1_s_at--469--7631Chr02:5799361..5799385 (25 bp)
GGGACTCCGGTAGCGCTATGACATA
LOC_Os02g10920
Os.38796.1.S1_s_at--941--1991Chr02:5799358..5799382 (25 bp)
ACTCCGGTAGCGCTATGACATACGA
LOC_Os02g10920
Os.38796.1.S1_s_at--540--3811Chr02:5799357..5799381 (25 bp)
CTCCGGTAGCGCTATGACATACGAA
LOC_Os02g10920
Os.38796.1.S1_s_at--985--4251Chr02:5799355..5799379 (25 bp)
CCGGTAGCGCTATGACATACGAAAA
LOC_Os02g10920
Os.38796.1.S1_s_at--580--7851Chr02:5799353..5799377 (25 bp)
GGTAGCGCTATGACATACGAAAATT
LOC_Os02g10920
Os.38796.1.S1_s_at--593--4571Chr02:5799349..5799373 (25 bp)
GCGCTATGACATACGAAAATTACTT
LOC_Os02g10920
Os.38796.1.S1_s_at--1149--5531Chr02:5799267..5799366 (25 bp)
GACATACGAAAATTACTTGCACTGA
LOC_Os02g10920
Os.38796.1.S1_s_at--4--9951Chr02:5799263..5799362 (25 bp)
TACGAAAATTACTTGCACTGAGGTG
LOC_Os02g10920
Os.38796.1.S1_s_at--460--4111Chr02:5799261..5799360 (25 bp)
CGAAAATTACTTGCACTGAGGTGTA
LOC_Os02g10920
Os.38796.1.S1_s_at--584--2451Chr02:5799259..5799358 (25 bp)
AAAATTACTTGCACTGAGGTGTAAT
LOC_Os02g10920
Target Sequence 
GCGGGACTCCGGTAGCGCTATGACATACGAAAATTACTTGCACTGAGGTGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38796.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis