Browse Element(s) Details


Os.39076.1.A1_s_at

Description gb:CB685051
DB_XREF= gi:29688776
DB_XREF=OSJNEf15C14.r
CLONE=OSJNEf15C14
TID=Os.39076.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39076 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_196150.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0210011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02040Os.46087.1.S1_at9/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02040Os.12584.1.S1_x_at9/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02040Os.2331.1.S1_x_at7/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02040Os.2331.1.S1_at3/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02050OsAffx.18633.1.S1_at11/1112+609165..611432expressed protein
LOC_Os12g02050OsAffx.18633.1.S1_s_at11/1112+609165..611432expressed protein
LOC_Os12g02050OsAffx.18633.2.S1_at1/1112+609165..611432expressed protein
LOC_Os12g02060Os.55595.1.S1_at5/1112+613316..614845Cationic peroxidase 1 precursor, putative, expressed
LOC_Os12g02070Os.50351.1.S1_s_at3/1112+615651..616635expressed protein
LOC_Os12g02070Os.50351.1.S1_at1/1112+615651..616635expressed protein
LOC_Os12g02080Os.11549.1.S1_at11/1112+622582..625113Peroxidase 52 precursor, putative, expressed
LOC_Os12g02090OsAffx.31549.2.S1_x_at3/1112+626213..626638TCP family transcription factor containing protein
LOC_Os12g02090OsAffx.31549.1.S1_x_at2/1112+626213..626638TCP family transcription factor containing protein
LOC_Os12g02100Os.39076.1.A1_s_at11/1112+631454..637030expressed protein
LOC_Os12g02100Os.52675.1.S1_at11/1112+631454..637030expressed protein
LOC_Os12g02110OsAffx.19452.1.S1_x_at11/1112+637470..638114hypothetical protein
LOC_Os12g02120Os.5998.1.S1_at10/1112+638746..642600Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g02130Os.35188.1.S1_at10/1112+644370..650343expressed protein
LOC_Os12g02140NANA12+652258..652560hypothetical protein
LOC_Os12g02150Os.46014.1.S1_s_at10/1112+655105..657392expressed protein
LOC_Os12g02150OsAffx.18634.1.S1_at3/1112+655105..657392expressed protein
LOC_Os12g02160OsAffx.31551.2.S1_s_at11/1112+657672..658919hypothetical protein
LOC_Os12g02160OsAffx.31551.1.S1_at10/1112+657672..658919hypothetical protein
LOC_Os12g02170OsAffx.30780.1.S1_at11/1112+662016..663215hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39076.1.A1_s_at--745--3311Chr12:635490..635514 (25 bp)
CACAGTTGTCTCACAGGATGAGAAG
LOC_Os12g02100
Os.39076.1.A1_s_at--1023--10772Chr12:636297..636321 (25 bp)
TTGTTGTTCAAAGGCTTGGTGATGC
LOC_Os12g02100
Os.39076.1.A1_s_at--846--10832Chr12:636312..636336 (25 bp)
TTGGTGATGCAACAGCTGCCGGAAT
LOC_Os12g02100
Os.39076.1.A1_s_at--202--2492Chr12:636322..636346 (25 bp)
AACAGCTGCCGGAATATACAGTTTG
LOC_Os12g02100
Os.39076.1.A1_s_at--581--9872Chr12:636338..636362 (25 bp)
TACAGTTTGTTGTTCAGCAGCCTTG
LOC_Os12g02100
Os.39076.1.A1_s_at--539--1471Chr12:636366..636390 (25 bp)
AGAAGGCATCCATGGTCACCCTCTA
LOC_Os12g02100
Os.39076.1.A1_s_at--394--6692Chr12:636179..636514 (25 bp)
GTTGCCGCTCTGCTTCGTGTGGCTT
LOC_Os12g02100
Os.39076.1.A1_s_at--1028--7471Chr12:636506..636530 (25 bp)
GTGTGGCTTCTAACGGCATTTCATT
LOC_Os12g02100
Os.39076.1.A1_s_at--585--8272Chr12:636520..636544 (25 bp)
GGCATTTCATTTGGGCCGGCTCCAG
LOC_Os12g02100
Os.39076.1.A1_s_at--628--8312Chr12:636537..636561 (25 bp)
GGCTCCAGACAAACCTTGTCAAGGT
LOC_Os12g02100
Os.39076.1.A1_s_at--659--8172Chr12:636678..636702 (25 bp)
GGAACTGCTGCACGTACCCACAGAA
LOC_Os12g02100
Target Sequence 
CACAGTTGTCTCACAGGATGAGAAGTACAAAGCCAAGGTTTGTATAGATGTTGTTGTTCAAAGGCTTGGTGATGCAACAG
CTGCCGGAATATACAGTTTGTTGTTCAGCAGCCTTGAGAAGAAGGCATCCATGGTCACCCTCTACGCGTTGCCGCTCTGC
TTCGTGTGGCTTCTAACGGCATTTCATTTGGGCCGGCTCCAGACAAACCTTGTCAAGGTTCAGTGTTCTTAACACAAATG
CTTGATACGGGGAACTGCTGCACGTACCCACAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39076.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis