Browse Element(s) Details


Os.4022.1.S1_at

Description gb:AF376055.1
DB_XREF= gi:14030770
TID=Os.4022.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4022 (NCBI UniGene Cluster)
DEF=Oryza sativa putative Rop family GTPase ROP5 mRNA, complete cds.
PROD=putative Rop family GTPase ROP5
FL= gb:AF376055.1 gb:AK058414.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2085010/11RAC-like GTP binding protein RAC13, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20820OsAffx.30389.2.S1_at3/112+12305834..12306536retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g20820OsAffx.28661.1.S1_x_at3/112+12305834..12306536retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g20830OsAffx.10633.1.S1_at7/112+12309921..12312303retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g20840Os.27541.1.A1_at1/112+12312582..12318463retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g20844Os.51128.1.S1_x_at11/112+12320247..12324011Optic atrophy 3 protein containing protein, expressed
LOC_Os02g20844Os.51128.1.S1_at10/112+12320247..12324011Optic atrophy 3 protein containing protein, expressed
LOC_Os02g20850Os.4022.1.S1_at10/112+12324544..12326740RAC-like GTP binding protein RAC13, putative, expressed
LOC_Os02g20860Os.9586.1.S1_at11/112+12335373..12338628ATP11 protein, expressed
LOC_Os02g20870Os.49858.1.S1_at11/112+12339725..12348525RNA helicase, putative, expressed
LOC_Os02g20870Os.38745.2.S1_at2/112+12339725..12348525RNA helicase, putative, expressed
LOC_Os02g20880OsAffx.24948.1.S1_at11/112+12348939..12349757hypothetical protein
LOC_Os02g20880OsAffx.19134.1.S1_at1/112+12348939..12349757hypothetical protein
LOC_Os02g20890OsAffx.8512.1.S1_at9/112+12350041..12352794transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g20890Os.53378.1.S1_s_at1/112+12350041..12352794transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000226biological_processmicrotubule cytoskeleton organization and biogenesis
GO:0000902biological_processcellular morphogenesis
GO:0009734biological_processauxin mediated signaling pathway
GO:0009738biological_processabscisic acid mediated signaling
GO:0009860biological_processpollen tube growth
GO:0040007biological_processgrowth
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0005886cellular_componentplasma membrane
GO:0009524cellular_componentphragmoplast
GO:0030427cellular_componentsite of polarized growth
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4022.1.S1_at--1073--6771Chr02:12325885..12325909 (25 bp)
GTCTTTTTACTAGCATTTTCCCTCA
LOC_Os02g20850
Os.4022.1.S1_at--679--10651Chr02:12325868..12325892 (25 bp)
TTCCCTCATCAGCAAAGCGAGCTAT
LOC_Os02g20850
Os.4022.1.S1_at--971--5891Chr02:12325723..12325747 (25 bp)
GAGCTGAGGCATTATGCTCCTAATG
LOC_Os02g20850
Os.4022.1.S1_at--562--611Chr02:12325710..12325734 (25 bp)
ATGCTCCTAATGTGCCAATCGTATT
LOC_Os02g20850
Os.4022.1.S1_at--266--5431NONE
GAACCAAGCTTGACTTGCGTGAGGA
NONE
Os.4022.1.S1_at--1073--10011Chr02:12325549..12325572 (24 bp)
TAGCACCTATTTCCACTGCACAGGG
LOC_Os02g20850
Os.4022.1.S1_at--1025--1031Chr02:12325278..12325302 (25 bp)
AGGTGCTGCGGCGTACATCGAATGC
LOC_Os02g20850
Os.4022.1.S1_at--907--3071Chr02:12324832..12324856 (25 bp)
AATCAGTATTCGACTCGGCGATCAA
LOC_Os02g20850
Os.4022.1.S1_at--825--3271Chr02:12324810..12324834 (25 bp)
CAAAGTTGTACTTTGCCCGCCAAAG
LOC_Os02g20850
Os.4022.1.S1_at--75--6071Chr02:12324756..12324780 (25 bp)
GAGTTGCTGGATCCTATGAGTGATA
LOC_Os02g20850
Os.4022.1.S1_at--499--6611Chr02:12324723..12324747 (25 bp)
GATTGGCGTATTCCGCAGGAAACCT
LOC_Os02g20850
Target Sequence 
GTCTTTTTACTAGCATTTTCCCTCATCAGCAAAGCGAGCTATGAGAATATTCACAAGAAGTGGATACCAGAGCTGAGGCA
TTATGCTCCTAATGTGCCAATCGTATTAGTTGGAACCAAGCTTGACTTGCGTGAGGACAAGCAGTTCTTCCTGGACCNCC
CTGGTCTAGCACCTATTTCCACTGCACAGGGGGAGGAGCTGAAGAGGATGATAGGTGCTGCGGCGTACATCGAATGCAGC
TCCAAGACGCAGCAGAATGTGAAATCAGTATTCGACTCGGCGATCAAAGTTGTACTTTGCCCGCCAAAGCCGAAGAAGAA
GAACACCAGGAAGCAGNGGAGTTGCTGGATCCTATGAGTGATAAACAGCAAGATTGGCGTATTCCGCAGGAAACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4022.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis