Browse Element(s) Details


Os.40926.1.S1_x_at

Description gb:NM_193394.1
DB_XREF= gi:34913871
GEN=B1156H12.20
TID=Os.40926.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.40926 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative ubiquitin-specific protein (B1156H12.20), mRNA.
PROD=putative ubiquitin-specific protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3693011/11Ubiquitin carboxyl-terminal hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36900OsAffx.11357.1.S1_at11/111+20876458..20885520hypothetical protein
LOC_Os01g36900OsAffx.22442.1.S1_x_at3/111+20876458..20885520hypothetical protein
LOC_Os01g36900Os.6502.1.A1_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36900Os.6502.1.A1_x_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36900OsAffx.3521.1.S1_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36900OsAffx.3521.1.S1_x_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36900OsAffx.1331.1.S1_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36910Os.35344.3.S1_x_at10/111+20892716..20896877Transposable element protein, putative, MuDR
LOC_Os01g36910Os.35344.18.S1_x_at8/111+20892716..20896877Transposable element protein, putative, MuDR
LOC_Os01g36910OsAffx.22940.5.S1_x_at3/111+20892716..20896877Transposable element protein, putative, MuDR
LOC_Os01g36920Os.14280.2.S1_x_at11/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.1.S1_a_at11/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.2.S1_at9/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.50777.1.S1_at9/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.1.S1_x_at8/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.1.S1_at6/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.3.S1_x_at5/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36930Os.40926.1.S1_x_at11/111+20908462..20916430Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g36930Os.40926.1.S1_at11/111+20908462..20916430Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g36930Os.9089.1.S1_at9/111+20908462..20916430Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g36940Os.40925.1.S1_at8/111+20922069..20925696F-box domain containing protein, expressed
LOC_Os01g36950Os.4378.2.S1_a_at11/111+20926161..20929106expressed protein
LOC_Os01g36950OsAffx.2171.1.S1_at11/111+20926161..20929106expressed protein
LOC_Os01g36950Os.4378.4.S1_x_at10/111+20926161..20929106expressed protein
LOC_Os01g36960OsAffx.19542.3.S1_x_at10/111+20939332..20943554retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0016579biological_processprotein deubiquitination
GO:0004843molecular_functionubiquitin-specific protease activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40926.1.S1_x_at--1009--8891Chr01:20910529..20910553 (25 bp)
TGAGAAGGCTTCACCTTCACTGGGT
LOC_Os01g36930
Os.40926.1.S1_x_at--880--7691Chr01:20910508..20910532 (25 bp)
GGGTCGCACTGCTCTTTATACAAGA
LOC_Os01g36930
Os.40926.1.S1_x_at--755--5731Chr01:20910372..20910396 (25 bp)
GACTGTGCAGTTTGTTCGTTTCTTT
LOC_Os01g36930
Os.40926.1.S1_x_at--950--6551Chr01:20909776..20909800 (25 bp)
GATTACCCGCTGGAACTGGATGTTT
LOC_Os01g36930
Os.40926.1.S1_x_at--457--2691Chr01:20909634..20909739 (25 bp)
AAGCTCCCCGACAGATGCTGAGAGA
LOC_Os01g36930
Os.40926.1.S1_x_at--762--6131Chr01:20909251..20909274 (24 bp)
GAGGGTTCTAGTGTATCTATTCAAG
LOC_Os01g36930
Os.40926.1.S1_x_at--561--10511Chr01:20909232..20909256 (25 bp)
TTCAAGTAGCATGCTGCGACCCATA
LOC_Os01g36930
Os.40926.1.S1_x_at--396--4611Chr01:20909217..20909241 (25 bp)
GCGACCCATACTTCAATACTTTCAA
LOC_Os01g36930
Os.40926.1.S1_x_at--99--2871Chr01:20909076..20909100 (25 bp)
AAGTGCAGACTCAGGCCATTATGTT
LOC_Os01g36930
Os.40926.1.S1_x_at--934--8851Chr01:20908930..20908954 (25 bp)
TGATGACAACCCTAGCATACGCAAG
LOC_Os01g36930
Os.40926.1.S1_x_at--575--10411Chr01:20908806..20908911 (25 bp)
TTATCTGGTGGAGGCGACTGGCACA
LOC_Os01g36930
Target Sequence 
TGAGAAGGCTTCACCTTCACTGGGTCGCACTGCTCTTTATACAAGAGAGTACTTGACTGTGCAGTTTGTTCGTTTCTTTT
GGAAAAGGGAATCAAACCAGAAGGCAAAGATTTTACGGAAAGTTGATTACCCGCTGGAACTGGATGTTTATGACTTTTGC
TCAGATGAACTGAAACAAAAACTCCAAGCTCCCCGACAGATGCTGAGAGATGCAGAAAATGCTAAGTTTGGATTAAAAGC
ACAAGGAAAGGCCAGCAGCTCAAAAGAAAATGAGGGTTCTAGTGTATCTATTCAAGTAGCATGCTGCGACCCATACTTCA
ATACTTTCAATCTGAAACATTTGACTGGCATCTATGATTTAATTGCTGTTTTGACGCACAAAGGGAGAAGTGCAGACTCA
GGCCATTATGTTGGCTGGGTTAAGCAAGATGACGGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGA
GGAAGAGATTTTAAAGTTATCTGGTGGAGGCGACTGGCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40926.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis