Browse Element(s) Details


Os.41372.1.S1_at

Description gb:NM_192614.1
DB_XREF= gi:34912311
GEN=P0451D05.19
TID=Os.41372.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41372 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0451D05.19 (P0451D05.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0451D05.19 (P0451D05.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4119011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41140Os.8277.1.S1_at11/111+23618507..23619509expressed protein
LOC_Os01g41160OsAffx.21400.2.A1_at10/111+23627714..23629806FAD dependent oxidoreductase family protein, expressed
LOC_Os01g41160Os.48597.1.A1_x_at5/111+23627714..23629806FAD dependent oxidoreductase family protein, expressed
LOC_Os01g41160Os.5026.1.S1_at1/111+23627714..23629806FAD dependent oxidoreductase family protein, expressed
LOC_Os01g41170Os.25495.1.S1_at10/111+23638045..23639429expressed protein
LOC_Os01g41180OsAffx.23618.1.S1_x_at11/111+23640294..23640716hypothetical protein
LOC_Os01g41180OsAffx.23618.1.S1_at11/111+23640294..23640716hypothetical protein
LOC_Os01g41190Os.41372.1.S1_at11/111+23643156..23649741expressed protein
LOC_Os01g41190Os.5922.1.S1_at1/111+23643156..23649741expressed protein
LOC_Os01g41200Os.10535.1.S1_at11/111+23651313..23652141copper-binding family protein, putative, expressed
LOC_Os01g41210Os.34467.1.S1_at11/111+23655646..23658527transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g41210Os.39814.1.S1_at1/111+23655646..23658527transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g41220Os.19344.1.S1_at10/111+23659872..23664054expressed protein
LOC_Os01g41230OsAffx.21397.1.S1_at11/111+23665704..23666131hypothetical protein
LOC_Os01g41240Os.35573.1.S1_at11/111+23670154..23672300hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g41250Os.24958.1.A1_at4/111+23674598..23677381F-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41372.1.S1_at--1119--5491Chr01:23646742..23646766 (25 bp)
GAACAAAATTTTCCTGGCACTCCAG
LOC_Os01g41190
Os.41372.1.S1_at--484--6691Chr01:23647523..23647547 (25 bp)
GTTGCCACTGTTAACTGGTGCAGCT
LOC_Os01g41190
Os.41372.1.S1_at--559--5071Chr01:23647542..23647566 (25 bp)
GCAGCTGGTGCTTTTGGAGGATCAT
LOC_Os01g41190
Os.41372.1.S1_at--298--231Chr01:23647576..23647600 (25 bp)
ATATTGCTCTGGATCCAGCCTTTTA
LOC_Os01g41190
Os.41372.1.S1_at--1126--1271Chr01:23647605..23647629 (25 bp)
AGATCTTCAGGACAGACCTCATCGT
LOC_Os01g41190
Os.41372.1.S1_at--877--9611Chr01:23647623..23647643 (21 bp)
TCATCGTCAGTTCCTTCCAGGGAAT
LOC_Os01g41190
Os.41372.1.S1_at--715--10651Chr01:23648171..23648290 (25 bp)
TTCCCCTCCTCGAAATGATATTGTC
LOC_Os01g41190
Os.41372.1.S1_at--1155--6431Chr01:23648303..23648327 (25 bp)
GATCAGCGTCAGAACAAGCCTAGGA
LOC_Os01g41190
Os.41372.1.S1_at--456--312Chr05:17565257..17565308 (25 bp)
ATACTCTCTAACCATTCTAGTGCAC
NONE
Os.41372.1.S1_at--749--7331Chr01:23649178..23649202 (25 bp)
GTGCACCTTTTTTCTTAACTTCATT
LOC_Os01g41190
Os.41372.1.S1_at--76--10091Chr01:23649205..23649229 (25 bp)
TAGGTATCTCTCCTTTTTTAGACAA
LOC_Os01g41190
Target Sequence 
GAACAAAATTTTCCTGGCACTCCAGCTCTCCTTCCAGTCATGCAATTTGGCAGTCAGCATCCTGGTGGTGTTGGAGTTCC
TACTGTTGGTATGGCCCTCCCTGGCTATGTGGCTCAACAGCAGATGGGAATGGGAAATAACGAAATGACATGGTTGCCAC
TGTTAACTGGTGCAGCTGGTGCTTTTGGAGGATCATATCCACCTTATATTGCTCTGGATCCAGCCTTTTACTCCAGATCT
TCAGGACAGACCTCATCGTCAGTTCCTTCCAGGGAATCTATTGCTAACAAGGGGGCTTCCCCTCCTCGAAATGATATTGT
CAATGAAGAGGTTGATCAGCGTCAGAACAAGCCTAGGAGGCAAATACTCAGAGATGAACTTCAGTCAGTGAAGCACCATA
GTAGTACTATACTCTCTAACCATTCTAGTGCACCTTTTTTCTTAACTTCATTGATAGGTATCTCTCCTTTTTTAGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41372.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis