Browse Element(s) Details


Os.41402.1.S1_x_at

Description gb:NM_192570.1
DB_XREF= gi:34912223
GEN=P0415C01.14
TID=Os.41402.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41402 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0415C01.14 (P0415C01.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0415C01.14 (P0415C01.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4070011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40640Os.38077.1.S1_at11/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40640Os.38077.2.S1_x_at9/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40640Os.38077.2.S1_at1/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40650Os.14549.1.S1_at11/111+23310240..23312635expressed protein
LOC_Os01g40650Os.7579.1.S1_at1/111+23310240..23312635expressed protein
LOC_Os01g40660Os.45941.1.S1_at11/111+23313596..23314735embryo-abundant protein, putative, expressed
LOC_Os01g40670Os.8369.1.S1_at11/111+23315077..23318787single myb histone 1, putative, expressed
LOC_Os01g40680OsAffx.23610.1.S1_at11/111+23319400..23321019pentatricopeptide, putative
LOC_Os01g40690Os.11068.4.S1_x_at11/111+23322899..23325189holocarboxylase synthetase, putative, expressed
LOC_Os01g40690Os.11068.1.S1_a_at11/111+23322899..23325189holocarboxylase synthetase, putative, expressed
LOC_Os01g40700Os.7488.1.S1_s_at11/111+23326953..23329280expressed protein
LOC_Os01g40700Os.41402.1.S1_x_at11/111+23326953..23329280expressed protein
LOC_Os01g40710Os.15183.1.S1_at11/111+23330543..23331858expressed protein
LOC_Os01g40720OsAffx.23612.1.S1_at11/111+23332601..23335789pentatricopeptide, putative
LOC_Os01g40730Os.41397.1.S1_at7/111+23340272..23340787hypothetical protein
LOC_Os01g40730Os.41397.1.S1_x_at3/111+23340272..23340787hypothetical protein
LOC_Os01g40730Os.27284.1.S1_at1/111+23340272..23340787hypothetical protein
LOC_Os01g40740Os.41397.1.S1_x_at3/111+23342355..23343966hypothetical protein
LOC_Os01g40750Os.27284.1.S1_at11/111+23349926..23352964expressed protein
LOC_Os01g40750Os.41397.1.S1_x_at8/111+23349926..23352964expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41402.1.S1_x_at--720--9491Chr01:23327907..23327931 (25 bp)
TCTCGTCGTCGGCTTCAGGGTACAG
LOC_Os01g40700
Os.41402.1.S1_x_at--429--10691Chr01:23327940..23327964 (25 bp)
TTGCCCTTCTGCTTCTTGGGAGGAA
LOC_Os01g40700
Os.41402.1.S1_x_at--1155--451Chr01:23327989..23328013 (25 bp)
ATCCCCGTGGAATCAGTACCGACTA
LOC_Os01g40700
Os.41402.1.S1_x_at--1050--9931Chr01:23328005..23328029 (25 bp)
TACCGACTAGTCGACCGGGAAGCTG
LOC_Os01g40700
Os.41402.1.S1_x_at--876--5931Chr01:23328029..23328053 (25 bp)
GAGCAGGTGTATCATCTGGCTTCCA
LOC_Os01g40700
Os.41402.1.S1_x_at--673--2291Chr01:23328074..23328098 (25 bp)
AAATGTGCCCCGTTTATCTGCTTTG
LOC_Os01g40700
Os.41402.1.S1_x_at--1105--4631Chr01:23328125..23328149 (25 bp)
GCGTCTCCTCCAAAACTGAGTTCAG
LOC_Os01g40700
Os.41402.1.S1_x_at--301--911Chr01:23328148..23328172 (25 bp)
AGGCAATACATCAGGGAGTTCGTCA
LOC_Os01g40700
Os.41402.1.S1_x_at--590--1451Chr01:23328172..23328196 (25 bp)
AGAAGAGTCGTCTGCTTCAGCAAAC
LOC_Os01g40700
Os.41402.1.S1_x_at--356--2891Chr01:23328259..23328283 (25 bp)
AAGGGATTCCTTAGAGCACTGTATA
LOC_Os01g40700
Os.41402.1.S1_x_at--572--6151Chr01:23328323..23328347 (25 bp)
GAGGTCCAAACCTTGAAATCTGGCA
LOC_Os01g40700
Target Sequence 
TCTCGTCGTCGGCTTCAGGGTACAGCCATGGCCTTGCCCTTCTGCTTCTTGGGAGGAAAGATGAAGAGAAGCCTGTCAAG
GTATCCCCGTGGAATCAGTACCGACTAGTCGACCGGGAAGCTGAGCAGGTGTATCATCTGGCTTCCAGGAAAGACCAAGC
TCCNGGNTAAATGTGCCCCGTTTATCTGCTTTGGCCGTGCAGCTGCTGGGCTTGANGGGGCGTCTCCTCCAAAACTGAGT
TCAGGCAATACATCAGGGAGTTCGTCAGAAGAGTCGTCTGCTTCAGCAAACGAAGGAACTAATGGTTCGTTAACTGGAAA
TGAGAAAAAAGGTTGCCTTAAGAGCAACTCAAGAAGGGATTCCTTAGAGCACTGTATAGTGGTAAGTGAAGGTGAAGAGC
CACGAGAGTCACTGGAAGAGGTCCAAACCTTGAAATCTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41402.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis