Browse Element(s) Details


Os.4416.1.S1_at

Description gb:D14000.1
DB_XREF= gi:468491
GEN=lox2osPil
TID=Os.4416.1
CNT=42
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.4416 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) lox2osPil mRNA for lipoxygenase, complete cds.
PROD=lipoxygenase
FL= gb:D14000.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3984011/11Lipoxygenase 7, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39800NANA8+25060306..25060971retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g39810Os.12946.1.S1_at9/118+25061740..25069848transposon protein, putative, unclassified, expressed
LOC_Os08g39810Os.53962.1.S1_at1/118+25061740..25069848transposon protein, putative, unclassified, expressed
LOC_Os08g39810OsAffx.30109.1.S1_at1/118+25061740..25069848transposon protein, putative, unclassified, expressed
LOC_Os08g39810OsAffx.10596.1.S1_x_at1/118+25061740..25069848transposon protein, putative, unclassified, expressed
LOC_Os08g39820Os.8570.2.S1_x_at11/118+25073923..25077201expressed protein
LOC_Os08g39830Os.53403.1.S1_at11/118+25078672..25081893ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
LOC_Os08g39830Os.53403.1.S1_s_at11/118+25078672..25081893ETHYLENE-INSENSITIVE3-like 3 protein, putative, expressed
LOC_Os08g39840Os.4416.1.S1_at11/118+25083530..25091220Lipoxygenase 7, chloroplast precursor, putative, expressed
LOC_Os08g39840Os.49363.2.S1_at1/118+25083530..25091220Lipoxygenase 7, chloroplast precursor, putative, expressed
LOC_Os08g39840Os.56910.1.S1_s_at1/118+25083530..25091220Lipoxygenase 7, chloroplast precursor, putative, expressed
LOC_Os08g39850Os.13008.2.S1_at11/118+25108194..25117436lipoxygenase 8, chloroplast precursor, putative, expressed
LOC_Os08g39850Os.13008.2.S1_x_at11/118+25108194..25117436lipoxygenase 8, chloroplast precursor, putative, expressed
LOC_Os08g39850Os.13008.1.S1_at11/118+25108194..25117436lipoxygenase 8, chloroplast precursor, putative, expressed
LOC_Os08g39850Os.6901.1.S1_at1/118+25108194..25117436lipoxygenase 8, chloroplast precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009414biological_processresponse to water deprivation
GO:0009611biological_processresponse to wounding
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009688biological_processabscisic acid biosynthesis
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0030397biological_processmembrane disassembly
GO:0040007biological_processgrowth
GO:0009507cellular_componentchloroplast
GO:0016165molecular_functionlipoxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4416.1.S1_at--647--1811Chr08:25084001..25084025 (25 bp)
ACGACGGGTTCGCAGCCCGGCTCAA
LOC_Os08g39840
Os.4416.1.S1_at--846--8451Chr08:25083955..25083979 (25 bp)
TGGCCGGAACAAGGATAGAAAGCTC
LOC_Os08g39840
Os.4416.1.S1_at--655--291Chr08:25083941..25083965 (25 bp)
ATAGAAAGCTCAAGAACAGGTGCGG
LOC_Os08g39840
Os.4416.1.S1_at--246--8871Chr08:25083831..25083855 (25 bp)
TGATGAGACAAAACGCTCCAAAACT
LOC_Os08g39840
Os.4416.1.S1_at--1006--1811Chr08:25083819..25083843 (25 bp)
ACGCTCCAAAACTACTTGCAAATTG
LOC_Os08g39840
Os.4416.1.S1_at--443--431Chr08:25083794..25083818 (25 bp)
ATCATTCATCATCTACTGTTTTAAC
LOC_Os08g39840
Os.4416.1.S1_at--911--6771Chr08:25083777..25083801 (25 bp)
GTTTTAACCAATATGTCACTCCCAA
LOC_Os08g39840
Os.4416.1.S1_at--547--4371Chr08:25083770..25083794 (25 bp)
CCAATATGTCACTCCCAAATCTTTA
LOC_Os08g39840
Os.4416.1.S1_at--1148--751Chr08:25083765..25083789 (25 bp)
ATGTCACTCCCAAATCTTTATTGAT
LOC_Os08g39840
Os.4416.1.S1_at--663--6151Chr08:25083713..25083737 (25 bp)
GAGGTATCATACCATTTTTATAGTC
LOC_Os08g39840
Os.4416.1.S1_at--66--6911Chr08:25083671..25083695 (25 bp)
GTATCTCAAGGTATCACAATGTTTA
LOC_Os08g39840
Target Sequence 
ACGACGGGTTCGCAGCCCGGCTCAAGGAGATCGAGGGCGTCATCGATGGCCGGAACAAGGATAGAAAGCTCAAGAACAGG
TGCGGCGCCGGCATCCTGCCGTACCAGCTGATGAAGCCCTTCTCCGACTCCGGCGTCACCGGCATGGGCATCCCCAACAG
CACATCCATNTGATGAGACAAAACGCTCCAAAACTACTTGCAAATTGATCATTCATCATCTACTGTTTTAACCAATATGT
CACTCCCAAATCTTTATTGATTTTTATCATGTTTGAAAAGATAATCGAGAGGTATCATACCATTTTTATAGTCTAAAATT
TAGATATTATGTATCTCAAGGTATCACAATGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4416.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis