Browse Element(s) Details


Os.44564.1.S1_at

Description gb:NM_186150.1
DB_XREF= gi:34899385
TID=Os.44564.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44564 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (P0585H11.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (P0585H11.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0174011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01680OsAffx.16033.1.S1_at11/117+411226..411888Dirigent-like protein
LOC_Os07g01690NANA7+413199..413553hypothetical protein
LOC_Os07g01700OsAffx.28224.1.S1_at11/117+417244..417748hypothetical protein
LOC_Os07g01710Os.11806.1.S1_at11/117+423271..426822Leucine Rich Repeat family protein, expressed
LOC_Os07g01710Os.11806.2.S1_x_at11/117+423271..426822Leucine Rich Repeat family protein, expressed
LOC_Os07g01720Os.19340.1.S1_at11/117+427110..429906expressed protein
LOC_Os07g01730Os.27845.1.S1_x_at11/117+430383..435851expressed protein
LOC_Os07g01740Os.44564.1.S1_at11/117+436501..438003expressed protein
LOC_Os07g01740OsAffx.16034.1.S1_at10/117+436501..438003expressed protein
LOC_Os07g01750OsAffx.22519.1.S1_at11/117+438728..443413MATE efflux family protein, expressed
LOC_Os07g01760Os.11824.1.S1_a_at11/117+444477..449817Alanine aminotransferase 2, putative, expressed
LOC_Os07g01760Os.11824.1.S1_x_at11/117+444477..449817Alanine aminotransferase 2, putative, expressed
LOC_Os07g01770Os.33732.3.S1_x_at11/117+450047..452356C2 domain-containing protein, putative, expressed
LOC_Os07g01770Os.33732.1.S1_at10/117+450047..452356C2 domain-containing protein, putative, expressed
LOC_Os07g01780Os.33732.2.S1_at9/117+456037..458517expressed protein
LOC_Os07g01790OsAffx.17581.1.S1_at11/117+461196..461405hypothetical protein
LOC_Os07g01800OsAffx.22518.1.S1_at11/117+462657..463640Papain family cysteine protease containing protein
LOC_Os07g01800OsAffx.22518.1.S1_x_at11/117+462657..463640Papain family cysteine protease containing protein
LOC_Os07g01800Os.20514.1.S1_x_at1/117+462657..463640Papain family cysteine protease containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44564.1.S1_at--654--2731Chr07:437520..437544 (25 bp)
AAGAACCACAACCACGTACGGACAG
LOC_Os07g01740
Os.44564.1.S1_at--784--1711Chr07:437530..437554 (25 bp)
ACCACGTACGGACAGCTTAAAATCT
LOC_Os07g01740
Os.44564.1.S1_at--4--3691Chr07:437553..437577 (25 bp)
CTTTCTTTGGTTTCCTGACATGCAT
LOC_Os07g01740
Os.44564.1.S1_at--95--10251Chr07:437558..437582 (25 bp)
TTTGGTTTCCTGACATGCATATATG
LOC_Os07g01740
Os.44564.1.S1_at--698--4951Chr07:437574..437598 (25 bp)
GCATATATGTTCATCGATCCCTTTT
LOC_Os07g01740
Os.44564.1.S1_at--27--271Chr07:437578..437602 (25 bp)
ATATGTTCATCGATCCCTTTTTGTC
LOC_Os07g01740
Os.44564.1.S1_at--707--6731Chr07:437582..437606 (25 bp)
GTTCATCGATCCCTTTTTGTCATAA
LOC_Os07g01740
Os.44564.1.S1_at--334--3551Chr07:437585..437609 (25 bp)
CATCGATCCCTTTTTGTCATAATTA
LOC_Os07g01740
Os.44564.1.S1_at--186--6371Chr07:437589..437613 (25 bp)
GATCCCTTTTTGTCATAATTAACCA
LOC_Os07g01740
Os.44564.1.S1_at--190--2631Chr07:437609..437633 (25 bp)
AACCATAGTAACTGTCTAGTACCTA
LOC_Os07g01740
Os.44564.1.S1_at--837--2551Chr07:437618..437642 (25 bp)
AACTGTCTAGTACCTAAGCTCATGA
LOC_Os07g01740
Target Sequence 
AAGAACCACAACCACGTACGGACAGCTTAAAATCTTTCTTTGGTTTCCTGACATGCATATATGTTCATCGATCCCTTTTT
GTCATAATTAACCATAGTAACTGTCTAGTACCTAAGCTCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44564.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis