Browse Element(s) Details


Os.45893.1.S1_at

Description gb:NM_190850.1
DB_XREF= gi:34908783
GEN=P0415A04.29
TID=Os.45893.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45893 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0415A04.29 (P0415A04.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0415A04.29 (P0415A04.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5788010/11Plastocyanin-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57830Os.14919.1.S1_at2/111+33769654..33773560hypothetical protein
LOC_Os01g57830OsAffx.29313.1.S1_at1/111+33769654..33773560hypothetical protein
LOC_Os01g57840Os.33787.1.S1_at11/111+33775154..33776194expressed protein
LOC_Os01g57854Os.27505.1.S1_at11/111+33780283..33786927Pectinesterase family protein, expressed
LOC_Os01g57870Os.42318.1.S1_at11/111+33787267..33790602NB-ARC domain containing protein, expressed
LOC_Os01g57870Os.42318.2.S1_x_at11/111+33787267..33790602NB-ARC domain containing protein, expressed
LOC_Os01g57880Os.45893.1.S1_at10/111+33795421..33796840Plastocyanin-like domain containing protein, expressed
LOC_Os01g57890Os.18390.1.S1_a_at11/111+33798748..33805306START domain containing protein, expressed
LOC_Os01g57900Os.32277.1.S1_at11/111+33805833..33808190pentatricopeptide, putative, expressed
LOC_Os01g57910OsAffx.11639.1.S1_at11/111+33808778..33811037YOR3513c, putative
LOC_Os01g57920OsAffx.11640.1.S1_at11/111+33811634..33814672F-box domain containing protein, expressed
LOC_Os01g57930Os.34845.2.S1_x_at11/111+33816133..33819807CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os01g57930Os.34845.1.S1_at10/111+33816133..33819807CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os01g57940Os.33418.1.S1_at11/111+33821456..33823540Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g57940OsAffx.23830.2.S1_at1/111+33821456..33823540Serine/threonine-protein kinase RLCKVII, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45893.1.S1_at--884--4631Chr01:33795573..33795597 (25 bp)
GCGTTCGTGTTCAAGGCGGGCGGGA
LOC_Os01g57880
Os.45893.1.S1_at--311--2591Chr01:33795636..33795660 (25 bp)
AACGTCAGCGCCTACAACCAGTGGG
LOC_Os01g57880
Os.45893.1.S1_at--233--1031Chr01:33795655..33795679 (25 bp)
AGTGGGCCGAGCACACCCGGTTTCG
LOC_Os01g57880
Os.45893.1.S1_at--10--4251Chr01:33795671..33795695 (25 bp)
CCGGTTTCGCGTGGGTGACGCCATA
LOC_Os01g57880
Os.45893.1.S1_at--411--7711NONE
GGGTGACGCCATAGCGTTCTCTTAC
NONE
Os.45893.1.S1_at--643--9991Chr01:33796417..33796440 (24 bp)
TAGCGTTCTCTTACCAACCCGGCAA
LOC_Os01g57880
Os.45893.1.S1_at--688--2611Chr01:33796431..33796455 (25 bp)
AACCCGGCAACGACTCGGTGCTGCT
LOC_Os01g57880
Os.45893.1.S1_at--769--9351Chr01:33796458..33796482 (25 bp)
TCGACAAGAGCTCGTACGACGCCTG
LOC_Os01g57880
Os.45893.1.S1_at--820--2771Chr01:33796463..33796487 (25 bp)
AAGAGCTCGTACGACGCCTGCAACA
LOC_Os01g57880
Os.45893.1.S1_at--392--1851Chr01:33796487..33796511 (25 bp)
ACGAACACGCCGATCGACACGTTCG
LOC_Os01g57880
Os.45893.1.S1_at--910--5931Chr01:33796745..33796769 (25 bp)
GAGCAGTCGATCAACGCCGCGGCGC
LOC_Os01g57880
Target Sequence 
GCGTTCGTGTTCAAGGCGGGCGGGACGGGCGAGTNGCGCGTCCCGGATCAGCAGGCCAGCGGNAACGTCAGCGCCTACAA
CCAGTGGGCCGAGCACACCCGGTTTCGCGTGGGTGACGCCATAGCGTTCTCTTACCAACCCGGCAACGACTCGGTGCTGC
TCGTCGACAAGAGCTCGTACGACGCCTGCAACACGAACACGCCGATCGACACGTTCGCCGACGGNAACACGGTGTTCACN
TTNANCCGGTCCGGCCNGTACNANTTCATCAGCGGNAANANGGACAACTGCAACCGCAACGAGAAGCTCATCGTCGTGGT
CATGGGGGAGCGCGCCGCCAATGGCACGGCGCCGGCGCCGGCGCTGGCCCCGTCGGCCGGCACCACCAGCCCGAACTCGC
CACCGTCGCCGCCGCCTCCTCCGTCGGGCATCGAGATCTCGCCCACGCCGGAGCAGTCGATCAACGCCGCGGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45893.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis