Browse Element(s) Details


Os.46028.1.S1_at

Description gb:NM_184454.1
DB_XREF= gi:34895997
TID=Os.46028.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46028 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to Arabidopsis thaliana arginine--tRNA ligase (T06014) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) Similar to Arabidopsis thaliana arginine--tRNA ligase (T06014) (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0651011/11arginyl-tRNA synthetase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06430OsAffx.23042.1.S1_at11/111+3033492..3034091hypothetical protein
LOC_Os01g06440Os.31782.1.S1_at11/111+3034491..3035510expressed protein
LOC_Os01g06450OsAffx.10552.1.S1_x_at11/111+3036100..3038034Glycosyltransferase family 43 protein, expressed
LOC_Os01g06450OsAffx.10552.2.S1_x_at11/111+3036100..3038034Glycosyltransferase family 43 protein, expressed
LOC_Os01g06454Os.1460.2.S1_at10/111+3038282..3041148DNAJ protein, putative, expressed
LOC_Os01g06460Os.1460.1.S1_at11/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06460Os.1460.3.S1_x_at10/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06460Os.1460.3.S1_at1/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06470Os.174.1.S1_at11/111+3044234..3049067Importin alpha-2 subunit, putative, expressed
LOC_Os01g06480Os.56084.1.S1_at10/111+3048743..3049953Tha8, putative, expressed
LOC_Os01g06480Os.56084.1.S1_x_at10/111+3048743..3049953Tha8, putative, expressed
LOC_Os01g06490Os.24975.1.S1_a_at11/111+3051267..3054000Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g06500Os.32936.1.S1_at11/111+3055366..3056519lectin, putative, expressed
LOC_Os01g06510Os.46028.1.S1_at11/111+3057796..3063837arginyl-tRNA synthetase family protein, expressed
LOC_Os01g06520Os.34779.1.S1_at11/111+3064752..3068039Leucine Rich Repeat family protein, expressed
LOC_Os01g06530Os.1433.2.S1_at4/111+3075509..3079138retrotransposon protein, putative, unclassified
LOC_Os01g06530OsAffx.15865.1.S1_at1/111+3075509..3079138retrotransposon protein, putative, unclassified
LOC_Os01g06540OsAffx.10938.1.S1_at11/111+3080197..3081370PHD finger protein, putative
LOC_Os01g06550Os.12454.1.S1_a_at11/111+3082254..3087689zinc finger family protein, putative, expressed
LOC_Os01g06560Os.4770.1.S1_a_at11/111+3088161..3089652tumor-related protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006420biological_processarginyl-tRNA aminoacylation
GO:0004814molecular_functionarginine-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46028.1.S1_at--519--6711Chr01:3061218..3061242 (25 bp)
GTTCGACTGGTTGATCTACTTGATG
LOC_Os01g06510
Os.46028.1.S1_at--1084--9971Chr01:3061955..3061979 (25 bp)
TACCTTCAGTATGCACATGCCCGTA
LOC_Os01g06510
Os.46028.1.S1_at--1131--4531Chr01:3061973..3061997 (25 bp)
GCCCGTATCTGTTCCATTATCAGGA
LOC_Os01g06510
Os.46028.1.S1_at--165--3011Chr01:3062122..3062143 (22 bp)
AATGACTGGAGCCATTACCCTTGGC
LOC_Os01g06510
Os.46028.1.S1_at--1079--311Chr01:3062149..3062173 (25 bp)
ATACGAGCGTTTCCTCGGATTACAT
LOC_Os01g06510
Os.46028.1.S1_at--1084--6551Chr01:3062166..3062190 (25 bp)
GATTACATCTCATCCAGTTTACCGA
LOC_Os01g06510
Os.46028.1.S1_at--859--10311Chr01:3062183..3062383 (25 bp)
TTTACCGAGGTTGTGGAGCAGGCTT
LOC_Os01g06510
Os.46028.1.S1_at--474--5931Chr01:3062374..3062398 (25 bp)
GAGCAGGCTTGTGCCGATTTACAGC
LOC_Os01g06510
Os.46028.1.S1_at--225--192Chr01:3062390..3062414 (25 bp)
ATTTACAGCCCCATCGTTTGTGCGA
LOC_Os01g06510
Os.46028.1.S1_at--68--2391Chr01:3062635..3062659 (25 bp)
AAACGAGCCGTCTGCTGCTATGTGA
LOC_Os01g06510
Os.46028.1.S1_at--662--3551Chr01:3062672..3062696 (25 bp)
CATCATGAGGCAGTGTTTCCACCTG
LOC_Os01g06510
Target Sequence 
GTTCGACTGGTTGATCTACTTGATGAGGCTAAAGCTCGGAGCAAAGCACAACTCATCAAACGTTTCACTGGAAATGGTCA
AATTGCTGACTGGACAGATGATGAGCTCGATAGGACTTCAGAGGCTATAGGATATGGTGCTGTTAAGTATTCAGATCTTA
AAAACAATCGGCTGACAGACTACACATTTAGTTTTGATCAAATGCTGAGTGACAAGGGAAATACTGCTGTCTACCTTCAG
TATGCACATGCCCGTATCTGTTCCATTATCAGGAAAGCCAGCAAGGATGTAGAGAAGTTAAAAATGACTGGAGCCATTAC
CCTTGGCCATCCATACGAGCGTTTCCTCGGATTACATCTCATCCAGTTTACCGAGGTTGTGGAGCAGGCTTGTGCCGATT
TACAGCCCCATCGTTTGTGCGACTACTTGTATAGCTTATCCTTAACATTCTCCAAGTTTTACACAAACTGCCAGGTGGTT
GGTTCACCTGAAGAAACGAGCCGTCTGCTGCTATGTGAAGCAACAGGCATCATCATGAGGCAGTGTTTCCACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46028.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis