Browse Element(s) Details


Os.4612.1.S1_at

Description gb:AK107307.1
DB_XREF= gi:32992516
TID=Os.4612.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4612 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-D03, full insert sequence.
FL= gb:AK107307.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0710010/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07060NANA3+3581167..3581838glycerol-3-phosphate acyltransferase 8, putative
LOC_Os03g07070OsAffx.25001.1.S1_at11/113+3586043..3587368hypothetical protein
LOC_Os03g07070Os.36749.2.A1_at1/113+3586043..3587368hypothetical protein
LOC_Os03g07070Os.55736.1.S1_at1/113+3586043..3587368hypothetical protein
LOC_Os03g07080Os.27493.1.S1_at11/113+3595722..3601316Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g07090OsAffx.30774.1.S1_s_at11/113+3603944..3605013hypothetical protein
LOC_Os03g07100Os.4612.1.S1_at10/113+3605503..3607694Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g07100OsAffx.3160.1.S1_at5/113+3605503..3607694Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g07110Os.27089.1.S1_at11/113+3610246..3614636calmodulin-binding family protein, putative, expressed
LOC_Os03g07120OsAffx.25002.1.S1_at11/113+3616741..3621573lipase, putative, expressed
LOC_Os03g07120OsAffx.22506.1.A1_at1/113+3616741..3621573lipase, putative, expressed
LOC_Os03g07120OsAffx.13781.1.S1_at1/113+3616741..3621573lipase, putative, expressed
LOC_Os03g07130Os.34701.1.S1_s_at11/113+3626088..3630691ReMembR-H2 protein JR702, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0031225cellular_componentanchored to membrane
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4612.1.S1_at--654--4771NONE
GCTGCTCCAGCGAAGGACAACTCGA
NONE
Os.4612.1.S1_at--131--9251Chr03:3607385..3607409 (25 bp)
TCCTTCTAGATCACTGTCTGCATCA
LOC_Os03g07100
Os.4612.1.S1_at--1051--7251Chr03:3607418..3607442 (25 bp)
GTCCTCTGCAGCTACCGATCGAAAC
LOC_Os03g07100
Os.4612.1.S1_at--50--3031Chr03:3607497..3607521 (25 bp)
AATGCCTGGTGAAAAACTGAGACTC
LOC_Os03g07100
Os.4612.1.S1_at--1140--9051Chr03:3607533..3607557 (25 bp)
TGCATCCGTGCATATGTTGTAGTAT
LOC_Os03g07100
Os.4612.1.S1_at--995--3151Chr03:3607570..3607594 (25 bp)
AATTCGTTGGCGTTTGCAGTGTACT
LOC_Os03g07100
Os.4612.1.S1_at--121--7011Chr03:3607590..3607614 (25 bp)
GTACTGTACTGCACTGTTTGTTCTT
LOC_Os03g07100
Os.4612.1.S1_at--295--1971Chr03:3607602..3607626 (25 bp)
ACTGTTTGTTCTTTTCCTGCTATGT
LOC_Os03g07100
Os.4612.1.S1_at--105--4271Chr03:3607617..3607641 (25 bp)
CCTGCTATGTTCTGGATTCTGGACG
LOC_Os03g07100
Os.4612.1.S1_at--1121--1871Chr03:3607639..3607663 (25 bp)
ACGATGTGTTTTGCTACTCCTACTA
LOC_Os03g07100
Os.4612.1.S1_at--721--4891Chr03:3607664..3607688 (25 bp)
GCTTTTCTATAGTACATCTGGTTAC
LOC_Os03g07100
Target Sequence 
GCTGCTCCAGCGAAGGACAACTCGACGACGACGACCGACTCGCGCGCTGTGCAGGCGGCCAACGGGGGCAGCCGCTCGTC
GGCGGCGACCGCCGGCGCCGCGCTGACGGCGTTGCTGGCCGGCTACTTCCTCCTGCTCCTGCCGGAATTCTCAGCTCCGT
CGTCCTTCTAGATCACTGTCTGCATCATCTCGTGCGTCCTCTGCAGCTACCGATCGAAACCAAGAACACGGGATTGGATG
GAGCCAGATCAATTAGTGGGCGATTATATTGGACAATGCCTGGTGAAAAACTGAGACTCAGAGAGTGTGATGCATCCGTG
CATATGTTGTAGTATGTGACAGATAGTAATTCGTTGGCGTTTGCAGTGTACTGTACTGCACTGTTTGTTCTTTTCCTGCT
ATGTTCTGGATTCTGGACGATGTGTTTTGCTACTCCTACTAGCTTTTCTATAGTACATCTGGTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4612.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis